Report for 3940.m00146

 > 3940.m00146, length: 836, copies: 1 

MPMSRHGALALTTSFLLAAVAVFLPGHAAARQFSTVAISNSPDATVVCALVRPKDVPDDVPGAKLRCTSMPTGEV

MSYPSADVPYNAIAAGTDFLCGLMAPNGGHAAMRWWSFSDEAAANRSRPVGRRLYWGPSLRALSAGGPHVCGLSD

AHDPTCWEWPGLSLPKGLDFSRIALGRDFLCGVVKGNASAMTCFGGGMAPPAFAGAASIVAVAAGHRHACAVDDD

GGMSCWGEGYPDMRPGDLPADMKSMALGRNTTCILDGDDMVRCWGVEVPEEYRRASFVSIEADGDTVCGVLTTNF

SVVCWGNERFHGRHLIFNDTMPGACATVGNCSSSCGFVPGSAALCGNGGGEGGEQLVVCQPCKLPLNASRLVVGN

GTSKNAAAPTDSGKNRKAVKVAVTAACVGVAALVVAGLVLYLAVVRKRGGKKNATVQLGESSTLTLCRDLEGAVI

MPAPEASPPPPPLGCEEFTVKELSRLTNGFAEERKIGSGSFGSVYRAKLPDGREVAIKRAERPRAASGGGRRRRR

RYDAERAFRAELRLLSRVNHRNLVQLLGFCEERGERILVFEFMPHGALHDHLHGRVDGHSPLFASWEARLRVALD

AARGVEYLHCYAVPPIIHRDIKPSNILLDGEWTAKVSDFGLSLASSSSSSATATPPAACSTSSTAGTVGYIDPEY

YRLQELTQRSDVYSFGVVLLELVTGRKAIHRQEGGSGSPRNVIEFAVPAVEAGGVGRIMDGRVPAPRGNEAEAVS

RVARIASECVRPRGRARPVMSEVVAELEWAVTLCEESVDRSSAAAQQQNSSRHGGSDVSRSESDDPSPFHTREFA

GVGHGRSNSAM

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam fs]	480	704	3.7e-50
Ser/Thr pkinase [Pfam ls]	480	779	2.3e-44

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	384	578	1e-10
Rpg1 [Hordeum vulgare]	386	778	7e-25
FLS2 [A.thaliana]	392	777	2e-37
Rpg1 [Hordeum vulgare]	467	800	6e-33
Pto [L. esculentum]	468	788	2e-47

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	29	in -> out
putative TM domain	397	419	out -> in

Report for 3940.m00146

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)