Report for 3949.m00175

 > 3949.m00175, length: 908, copies: 2 

MAELVPQVVGAVSRSIAGRLLADIDLASSVGTNVEDVTDALTRLTSIRADLEASMGRLPQRRRPEEVTDWLSRVD

GAEKRVAKLRREYQRRCCSCGGGGAFSLNLFASYAISRRACHERHRLAALLGECDRVRSLAAGAPRPSSGAMVVP

STVVGMEGYLEEALACLDDRDAGVVAICGMAGVGKSTLLRRINNVFVQDPDRRHEFDYVIWLDAPGDCAAVGKMQ

DAMAHRLGLCALPDGGAPDHRARPIFEVLRDSSFLLLLDGVTKPVDLVDIGVPHLVHDDRRRQKVAMTTRTRGVC

GRMSSSRRIDMQCLDSDHSWRLFREIARDETINADPRIPDLAKEVAGRCGGLPLVLTAIGGAMRCRRQPEEWVST

VTALRNLELAKIPGMDAGEKPGAMLRSLQESYGDLRHPVLQKCFLATSLWPEGHAIDKGELVECWIGLGLVGESL

PMDEAVRTGLAVLNELEEANLLLPGDATGEVKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFE

RARDAERVSAMRSSVERLRAMPPPSSPCRSLSVLMLQHNAALRDIPGGFLLGVPALAYLDASFTGVREVAPEIGT

LASLRYLNLSSTPLESVPPELGRLRQLRHLLLRHTARLSAFPAGVLRGLPSLDVLDVCPSRYTEWCGAGGGGGGA

SLDELRSSSAFVRSLGISVATLAGLRALRGLDNVRTRRLTVTRVAATAPSVALRPSMLGLLEALHELTVAKCSGL

QELEVVAGEEDNAWWRLPELRKLEIDELHELAAVRWTRTDVGAFLPALRWVKISHCNRLRNVSWAVQLPCLEQLE

LRHCSEMVHVVDIDGDDEEQRREHPETRTFRCLRRLLLVELPSMGSIGGGAALSFPWLETLEIAGCDSLGELPVE

LQKKLKEI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	136	451	6e-52
NB-ARC [Pfam ls]	136	451	8.8e-52
LRR [Pfam ls]	555	579	3.6
LRR [Pfam ls]	603	625	0.012
LRR [Pfam ls]	626	650	0.26

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	555	579	0.11
LRR [sensitive, ls]	555	579	3.6
LRR [sensitive, ls]	580	602	2.1
LRR [sensitive, ls]	580	602	67
LRR [sensitive, ls]	603	625	0.00038
LRR [sensitive, ls]	603	625	0.012
LRR [sensitive, ls]	626	650	0.0083
LRR [sensitive, ls]	626	650	0.26

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	34	900	1e-89
I2 [L. esculentum]	125	655	6e-18
Pib [Oryza sativa].	151	492	8e-12
RPM1 [A. thaliana]	174	631	5e-16
Xa1 [Oryza sativa]	174	478	5e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	65	90

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3949.m00175

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)