Report for 3949.m00176

 > 3949.m00176, length: 984, copies: 2 

MDAPADQQVADSTSTCCAIHLWSELDDMLDVARNVRRLEETVGQLAAQRSSLHGAIVDARVVGVDDGEDGGAADR

LRRLGCTEEAANWLGRARVAEKQGNAVAADYAALSMPRLRLVARYRIGKRASRALRQAQQLVQERGAICAARRGV

GSFAATTHQSAPTPAAAAVGTEDYLKEALGYIADDAVGVIGVCGMGGVGKTTLLRAINNSFLPTARQPPASSKVF

DHVVWAVASKECRIDRLQDDVAKKLGLPLASLPDEHSDADLEQRALPIAEHLKNTGFLMLLDDLWECFDLKLIGV

PYPDGSAGDELPRKVVLTTRSEIVCGNMKADRVLNVECLKPDDAWTLFEMNATAAAVTSHPAIAGLAREVAGECR

GLPLALITIGKALSTKTDPELWRHAIDKLRNAHLHEITGMEEENAGMLRVLKVSYDYLPTTTMQECFLTCCLWPE

DYSIEREKLVECWLGLGLIAGSSSIDDDVETGARIIAALKDVRLLESGGDVVGDTRGVRMHDMIRDMAIWIASDC

GATRNRWLVRAGVGIKTASKLNEQWRTSPAAAGASTERVSLMRNLIEELPARLPARRGVRALMLQMNTSLRAIPG

SFLRCVPALTYLDLSDTIVMALPGEIGSLVGLRYLNVSGTFIGALPPELLHLTQLEHLLLSDTNMLDSIPRNVIL

GLQKLKILDVFASRYTRWRLNADDDDAATASEASLDELEARNASIKFLGINVSSVAALRKLSGFTNVSTRRLCLK

DMAGPASLTLLPSTLSDTLGGLDMLERLQHLAIRSCTGVKDIVIDAGSGSGSDSDDELRRSFRLPKLDRLRLLSV

RHLETIRFRHTTAAAHVLPALRRINILNCFQLKNANWVLHLPALEHLELHYCHDMEAIVDGGGDTAAEDRRTPTT

FPCLKTLAVHGMRSLACLCRGVPAISFPALEILEVGQCYALRRLDGVRPLKLREIQGSDEWWQQLEWEEDGIKDA

LFPYFKNHS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	152	474	1.2e-64
NB-ARC [Pfam fs]	183	474	3.5e-67
LRR [Pfam ls]	631	653	0.23
LRR [Pfam ls]	654	678	2.8

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	560	579	3.2
LRR [sensitive, ls]	560	579	100
LRR [sensitive, ls]	608	630	0.37
LRR [sensitive, ls]	608	630	12
LRR [sensitive, ls]	631	653	0.0074
LRR [sensitive, ls]	631	653	0.23
LRR [sensitive, ls]	654	678	0.088
LRR [sensitive, ls]	654	678	2.8
LRR [sensitive, ls]	777	801	4.3
LRR [sensitive, ls]	777	801	140
LRR [sensitive, ls]	929	951	4.1
LRR [sensitive, ls]	929	951	130

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	16	980	1e-102
Pi-ta [Oryza sativa]	71	479	1e-11
Xa1 [Oryza sativa]	155	518	4e-26
N [N. glutinosa]	169	535	8e-14
Pib [Oryza sativa].	169	658	2e-20
I2 [L. esculentum]	189	696	1e-31
RPM1 [A. thaliana]	189	686	9e-27
Mla1 [Hordeum vulgare].	190	686	4e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3949.m00176

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)