Report for 3959.m00163

 > 3959.m00163, length: 1401, copies: 1 

MAELLSALLPALLKKAGESLSTEFSFIGGIEHRRSELYTLLLAINQVIYGAEEQASKKPAVKSWITKLKLAACDA

DDALDELHYEALRSEALRRGHKINSGVRAFFSSHYNPLLFKYRIGKKLQQIVEQIDQLVSQMNQFGFLNCPMPED

ERMQTYSYVDEQEVIGRDKERDEIIHMLLSAKSDKLLILPIVGIGGLGKTTLAQLVFNDVKVKAHFQKHMWVCVS

ENFSVPDIVKGIIDTAIGNDCGLKSDNLELLQQRLREELSQKRYLLVLDDVWNEDEQKWEALRTLLCSCKMGSAV

VVTTRNSNVASVMGTVPPLALEQLSQEDSWTLFCERAFRTGVAKSCEFVEIGTKIVQKCSGVPLAINSMGGLLSR

KHSVRDWLAILQNNTWEENNILTVLSLSYKHLPSFMKQCFAFCAVFPKDYEIDKDDLIHLWISNGFIPSKETSDI

EETGNKVFLELLWRSFFQNAKQTRSRKEEYIYGYKDVTTCKIHDLMHDLAVSISGDECYTLQNLVEINKMPKNVH

HLVFPHPHKIGFVMQRCPIIRSLFSLHKNHMNSMKDVRFMVSPCRALGLHICDNERFSVEPAYMKHLRYLDLSSS

DIKTLPEAVSALYNLQILMLNRCRGLTHLPDGMKFMISLRHVYLDGCSSLQRMPPGLGQLSSLRTLTMYMVGNES

DCRLHELKDLELGGKLQIHNLLKVTNPLQAKEANLENKKNLQQLALCWDSRNFTCSHCHSADEYLQLCRPEEVLD

ALKPPNGLKVLKLRQYMGSNFPMWMEDGVTLQNIVKLSLRGSVMCVKLPPVWQLPFLEVLRLKRMERLKYLCYRY

PTDEEYGNQLVVFQKLKLLSLEWMESLENWHEYDTQQVTSVTFPKLDAMEIIDCPKLTALPNVPILKSLSLTGNK

VLLGLVSGISNLSYLYLGASQGSSRRVRTLYYIYNGEREGSTDTKDEHILPDHLLSWGSLTKLHLQGFNTPAPEN

VKSISGHMMSVQDLVLSSCDCFIQHEGLQSPLWFWISFGCLQQLEIWYCDSLTFWPEEEFRSLTSLEKLFIVDCK

NFTGVPPDRLSARPSTDGGPCNLEYLQIDRCPNLVVFPTNFICLRILVITDSNVLEGLPGGFGCQGTLTTLVILG

CPSFSSLPASIRCLSNLKSLELTSNNSLTSLPEGMQNLTALKTLHFIKCPGITALPEGLQQRLHGLQTFTVEDCP

ALARRCRRGGDYWEKVKDIPDLRVTRTLASFLSCSEILQHIQIWRPGVLKTYHESFAGDLELEPCKAEFVRGLRY

DSLLLAGHDRRRGAQRPRECYGRGLYYSGILQFLRKYLELDVKQHYGCDSGEHALTEKTWKGTGMLAGAVCHAHY

LQVDLIFMVGNLAIGELIWKATAPARVKFVWLAVKGRCLTADILLKRGMAS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	148	447	4.2e-81
NB-ARC [Pfam ls]	148	447	1.2e-81
LRR [Pfam ls]	591	613	0.22
LRR [Pfam ls]	614	634	4
LRR [Pfam ls]	638	661	0.31
LRR [Pfam ls]	1141	1164	0.048

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	591	613	0.0082
LRR [sensitive, ls]	591	613	0.22
LRR [sensitive, ls]	614	634	0.15
LRR [sensitive, ls]	614	634	4
LRR [sensitive, ls]	638	661	0.011
LRR [sensitive, ls]	638	661	0.31
LRR [sensitive, ls]	783	805	1.8
LRR [sensitive, ls]	783	805	48
LRR [sensitive, ls]	890	913	1.6
LRR [sensitive, ls]	890	913	44
LRR [sensitive, ls]	1015	1039	3.7
LRR [sensitive, ls]	1015	1039	100
LRR [sensitive, ls]	1040	1061	0.41
LRR [sensitive, ls]	1040	1061	11
LRR [sensitive, ls]	1072	1095	0.27
LRR [sensitive, ls]	1072	1095	7.3
LRR [sensitive, ls]	1117	1140	1.9
LRR [sensitive, ls]	1117	1140	52
LRR [sensitive, ls]	1141	1164	0.0018
LRR [sensitive, ls]	1141	1164	0.048
LRR [sensitive, ls]	1165	1185	4.1
LRR [sensitive, ls]	1165	1185	110

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	3	666	2e-46
I2 [L. esculentum]	36	883	1e-115
Pib [Oryza sativa].	51	336	5e-11
RPM1 [A. thaliana]	62	852	8e-52
Xa1 [Oryza sativa]	116	1199	1e-77
RPS2 [A. thaliana]	117	886	1e-35
M [L. usitatissimum]	159	666	5e-15
Pib [Oryza sativa].	160	876	5e-40
N [N. glutinosa]	162	889	7e-13
Pi-ta [Oryza sativa]	163	704	7e-24
RPP5 [A. thaliana]	173	1202	2e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3959.m00163

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)