Report for 3968.m00106

 > 3968.m00106, length: 804, copies: 2 

MAEVLLSSFAVSIIGKIILFVSEHGLMGIKSDRSVHQELGKLQNSLQAISGVLLDAERKQSTSSALKEWLRKLKD

VMYDIDDILDDASTETLKRRVSKDVVTQTNCVHISRLKLRRKLLKRKKKWSSRIREVHEKLNEIAASKKDFGLTD

WTVGGQCSEEPERESYSFVYQPDIIGRDDARDEIVSKILRAAEHHDIFVLPLLGLGGIGKTELANMVYHDQQIRE

RFSKMMWACVSNKFNLKNILQDIIESASGESCKHLNLEHLQNKLRGILQNGNYFLVLDDLWTRDVNEWRELRNLL

SSGARGSVIIVTTRENVVASMVGTSDPYKVGALPFHECMQIFTRVAFRQGEENKYPWLLKIGESIVKKCAGVPLA

IKSLGSLLFTMRDETQWLRVKEDHLCKIVQGDRDIMPVLKLSYNALPAALKPCLSYLSIFPKDFEYYRRCIIMFW

MAHGLLNSNKLSEEIDVGNQYIIELIGSSLFQDSLITFDGSMPHCKLHDIVHDLGRYVLDTDLAVVNCEGQQVSE

TVRHLVWDLKDFTHEQEFPRHLIKARKARTFISSCNHGSLSKKFLEVLLSKLLLLRVLIISGVRIDELPDSIGNL

KHLRYLDLTWNKTIKYLPNSLCKLINLQTLDLYRSDQLIELPRDVNKLISLRYLSLTSKQKQLPEAGLRGWASLT

SLQLHSCSELTSLSEGIGSLTALQMLWISDCPKLPSLPASMTHLSSLRELFIDNCPELDLMHPEEAMDGLWSLRS

LQIIGLPKLERLPDTLCSASGSLRYLLIEQCPNLRELPSFMQDLTNHQRQGGIH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	158	461	1.5e-59
NB-ARC [Pfam ls]	158	461	1e-59
LRR [Pfam ls]	602	625	1.5
LRR [Pfam ls]	626	649	4
LRR [Pfam ls]	673	696	0.46
LRR [Pfam ls]	772	795	4.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	579	601	0.37
LRR [sensitive, ls]	579	601	8.6
LRR [sensitive, ls]	602	625	0.066
LRR [sensitive, ls]	602	625	1.5
LRR [sensitive, ls]	626	649	0.17
LRR [sensitive, ls]	626	649	4
LRR [sensitive, ls]	673	696	0.019
LRR [sensitive, ls]	673	696	0.46
LRR [sensitive, ls]	697	720	0.7
LRR [sensitive, ls]	697	720	16
LRR [sensitive, ls]	747	770	3.6
LRR [sensitive, ls]	747	770	83
LRR [sensitive, ls]	772	795	0.19
LRR [sensitive, ls]	772	795	4.4

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	35	654	2e-50
Mla1 [Hordeum vulgare].	37	701	4e-35
I2 [L. esculentum]	39	661	2e-82
Pib [Oryza sativa].	53	321	9e-14
Pi-ta [Oryza sativa]	69	706	9e-35
RPS2 [A. thaliana]	111	794	1e-27
Pib [Oryza sativa].	163	654	3e-36
N [N. glutinosa]	167	796	4e-24
Xa1 [Oryza sativa]	167	654	4e-57
RPP5 [A. thaliana]	580	795	2e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3968.m00106

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)