Report for 4000.m00169

 > 4000.m00169, length: 1787, copies: 1 

MAGTSSSSNTSTGGYSLMGCIKDILTLKGDNYAEWKRKLDLAFILGDVDWVLTTPCPIEPAELIRGENESDADWQ

KRQRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQL

VTERYHGGGVRDHILRMSNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQEE

ERIKESNGCSINYVKDNKKKNHKSSPTSKAKQSQHLPQQQQFAVEKDQCLHCKKTGHYKKDCPDFLKMIMARKDE

LYLLSLSENVNVVSSLTKENKKRKRTPDVSSKLWHCRLGHISRGRIERLVKNEILPPLEFSDLEQCIECIKGKFV

KSIKKGAKRSTGILEIIHTDICGSFPVKSVDGYDSFITFTDHYFRYGYIYPIKERSEALDKFKIFKAEVENQHDI

KIKVVRSNRGGEYYGRHTPYGQVHGPFARFLLENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMMSYSTLPLG

LWMEALKTAIHILNRVPSKSMPKTPYELWTGRVPSLAHLRVWGSPAEAKVFNPNIGKLDPKTVSCHFIGYPERSK

GYRFYCPNSYTKFVETRHAVFLEDEMIRGSSVVREIDLEERRVSVPAPSTQEPFFSLPADVVPAIPVIDVPAPVV

TSPVATMNENEEPVIQDSTEMVATPEEELQQPQIDNVPVQETQQEPQVQDVPNVQAPRRSERVKRSAIRDDYKVY

NIEELHMEDDPTSYEEAMRSARSSEWLEAMKDEMKSMKLNNVWDLEEIPKGAKTVGCKWVYKTKYDSRGNIEKFK

ARLVAKGFTQREGIDYNETFSPVSCKDSFRIIMALVAHYDLELHQMDVKTAFLNGDLKEKVYMAQPKGFVMKRNE

NMGCRLKRSIYRLKQASRQWYLKFDGTIKKFGFQENVEDNCIYSKFKNGRFIFLTLLLTTIIPKLYTLISGQYNL

EETIRQDIRSIKNELDMMLSAIQDYSSLLMTTRSGDGRHHHQLGAGAVQATWIEKVRTLAHQMEDCIDSYIYDQM

APHGSRRQGPARFASEVRELRSRSAELSQLNQHTLSSAAPLSTSPDELVGMEARRRELLELVNGEGQPEQQRKVI

SIVSFGGLGKTVLANQVYCDTDELNFSPRAWVSAAEKTAGEVLMEILQRFEVRVRDMPYFDQLSKRLREHLRNKS

ASYCEMFSARVNRYLIVIDDIRVEQWCNMEPAFPADHGISSRIVVTTSIQSIANACSIPKGYIYKMEKLDAECSK

NLFFRSASIEECSPDIERGSESLRKKCDGLPLALICGVGYYLENDNNALARMQGLLARSYACLPCHDAKACLLYL

GMFPSNYPIRRRRLLMRWLAEGLVRKRPHPRLGDAAVNNFRTFMDRNIVHPVGVSTNDEVKTCQLPGMMLEFILH

RSISEGFITLVSDENVMPRYAPRRLAVQLSTAAVKDRLGPRSDLSFVRSLMVSGIASQCVLDFSRYKLLKVLDLE

QCDGLTDQHLEGVSNLLLLKYLSLGGEVTMLPKKIETLSFLETLDVRRAKVDVMVFPVEAIVLPKLIHLFGKFKL

FGKIEDGDDLNDARSLSVHFNECSEDIMNFSLQGACNLSTLKLQGDLHQIPPFVPSLVALTELSLTSTTLRQELL

TSLTELRCLVYLKLVAQNLEGFVIKVGAFQSLQRLCMVVQNPSFLEIQDGALPQLVSLQLMYENLANLPLINIGG

IKRLREVVLDSADKHAGIEGIAAVSMLLSHQHWDKLAGDELVSRAAEYLSLTVEKNAPNRNM

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	1079	1310	3e-11
NB-ARC [Pfam ls]	1079	1379	1.4e-13
NB-ARC [Pfam fs]	1334	1379	8.6e-06

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
Integrase core domain [fs]	384	555	8.3e-44
Integrase core domain [ls]	384	555	1.2e-43

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	954	1546	9e-54
RPM1 [A. thaliana]	962	1569	7e-27
I2 [L. esculentum]	1092	1569	1e-19
Pib [Oryza sativa].	1092	1569	7e-35
Pi-ta [Oryza sativa]	1097	1618	5e-40

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Zinc knuckle	272	289	0.00014
Integrase core domain	384	555	1.7e-43

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4000.m00169

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)