Report for 4029.m00241

 > 4029.m00241, length: 617, copies: 1 

MAGRIGGGMAALSVSEIEIVQECGMKIAEKCDGLPLAIKIWSKMGLPEELNKAIYLSYEDLSHNLKQCFVYYSLF

PKDEIIGIDKIVSMWIAEGFIGKDGYSAQSAGLDYYKELIKRNLLEPQNDYYNEEHCIMHDVVHSFAQHVARDEA

LDSLCHLKHLRYLELRYTDISELPRNIGRMKFLEHIGVRGCHRLSKLPSSIIKLDNLRHLSIDETKIRAIPRGFS

RLLNLDVLWGFPVHGVAQGTAKHYCTLEDVGPVSQLRKLKLKGLENAPSKSAALAELGTKSRLTCLELWCSNDET

KDAIVTVEQEQIKELFDLLRPAECLEELTIGGYYGDTVPDWIKMPEAAIFKDLRRLNLQNLVSCIQLPDGLGQLP

NLDFFVVDDAPCIKQIGHCLLFEQGQRNMDNKKSSRHVAFPKLHELHLKGMMEWNEWTWEKHVEAMPVLSVLHVK

DCNLSHLPPGLPYQARALKRLCVINARNLNSVEGFSSVIKLEVYGNPNLERIVDLPSLQNLTIVNCPKLMLLDGV

ASVQIMELGDHGMETLPEYLRHLTLRHLKIVCSLNLLRLMSTKHDASRSEWEKISHIMHVEGFASDNGDGILRWY

MSYTRDPYNLETNITSR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	48	101	9.9e-13
LRR [Pfam ls]	159	181	0.28
LRR [Pfam ls]	206	228	0.63
LRR [Pfam ls]	443	462	4.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	159	181	0.012
LRR [sensitive, ls]	159	181	0.28
LRR [sensitive, ls]	182	205	1.5
LRR [sensitive, ls]	182	205	35
LRR [sensitive, ls]	206	228	0.027
LRR [sensitive, ls]	206	228	0.63
LRR [sensitive, ls]	352	375	1.2
LRR [sensitive, ls]	352	375	28
LRR [sensitive, ls]	443	462	0.2
LRR [sensitive, ls]	443	462	4.7
LRR [sensitive, ls]	487	512	0.3
LRR [sensitive, ls]	487	512	7.1
LRR [sensitive, ls]	527	549	2.8
LRR [sensitive, ls]	527	549	66

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	10	510	4e-19
Pib [Oryza sativa].	18	233	3e-13
I2 [L. esculentum]	20	586	1e-27
Xa1 [Oryza sativa]	20	149	1e-12
Mla1 [Hordeum vulgare].	48	307	7e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4029.m00241

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)