Report for 4133.m00181

 > 4133.m00181, length: 901, copies: 1 

MEAVILAVSKIGSVLVEEATKAAITKLSEKATNLKELPSKVEEIEDELKTMNNVIKQMSTTNLTDEVVKGWIAEV

RGLAHRVQDIMDKYSYHALKLEEENSVKKLFTTPNYVTVFSEIAEEISKIEKKIENVAMRKKRWQQQSQHTPNPL

ADIERKRSQDCLLAPDDLVGIEDNRKLLTDWLYSKEQDNTIITVSGMGGLGKTTLVNNVYEREKNNFEVSTWIVV

SQSYDVVDLLRKLLRKIVPDDQTQLLDLDAHDLKIRIKEKLKDENFLIVLDDVWNREAYTQIADAFPNFQASRII

ITTRQGDVATLAQSARQLKLNPLEHTDALELFCRRAFYRNCKCPQNLEKLTNDIVVRCQGLPLAIVSIGGLLSSL

PPENQVWNETYKQLRSELTKNNNVQAILNMSYHDLPGDLRNCFLYCSLFPEDHELSRETVVRLWVAEGFAVQNEE

NTPEEVAEKYLRELIQRNMLEVLGNDELGRVSTFKMHDLVRDLALSIAKEEKFGSANNYDTMERMDKEVRRLSSY

GWKGKPVLQVKFMRLRTLVALGMKTPSRHMLSSILSESNYLTVLELQDSEITEVPASIGELFNLRYIGLQRTRVK

SLPESIGKLSSLLTLNIKQTKIQKLPQSIVKIKKLRHLLADRYEDEKQSAFRYFIGMQAPKELSNLEELQTLETV

EASKELAEQLMKLMQLRSVWIDNIRTDDCANLFATLSKMPLLSSLLLSASHENETLCLEALKPESEELHRLIVRG

CWAARTLEYPIFRDHGKNIKYLAISWCRLQEDPLLLLAPYVPNLVFLSLNRVNSASTLVLSADCFPQLKTLVLKR

MPDVNHLEIIGGALQHIEGLYVVSLPKLDNVPQGIESLRYLKKLWLLGLHKNFRSQWQKNGMHQKMQHVPELHVK

D

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	152	450	2.6e-82
NB-ARC [Pfam ls]	152	450	7.3e-83
LRR [Pfam ls]	565	587	5.3
LRR [Pfam ls]	588	610	2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	565	587	0.48
LRR [sensitive, ls]	565	587	5.3
LRR [sensitive, ls]	588	610	0.18
LRR [sensitive, ls]	588	610	2
LRR [sensitive, ls]	611	633	3
LRR [sensitive, ls]	611	633	33

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	11	897	1e-110
Mla1 [Hordeum vulgare].	15	697	3e-62
I2 [L. esculentum]	41	672	2e-61
Pi-ta [Oryza sativa]	65	615	2e-41
Pib [Oryza sativa].	66	332	1e-12
L6 [L. usitatissimum]	159	501	3e-24
M [L. usitatissimum]	159	501	4e-23
N [N. glutinosa]	167	803	5e-13
Pib [Oryza sativa].	168	645	1e-51
RPS2 [A. thaliana]	184	857	2e-47
Xa1 [Oryza sativa]	190	854	6e-38

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	39	61

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4133.m00181

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)