Report for 4133.m00182

 > 4133.m00182, length: 905, copies: 2 

MAEAVMLVVSKIGSVLLEEITFTVISKLSEKITNLKELPVKVKEIGKELNMMNTFIKRISTTDLTDDVKAWIAEV

RELAHCVEDVLDKYSYHALKLDEENAVKQIFTKANYIKVFSEIADEITQIEGKIENAVKRKDRWLQLSELTPYPL

ADVQRKQSRDCLLELVQDDLVGIEDNRKQLTKWLYSDEQGSTVITVSGMGGLGKTTLVANVYEQEKMNFNVYHWI

VVSQKYDIAELLRKMLRKCWSLEHTQLADLDAHDLKSAIKERLKDSKCLVVLDDVWNREVYTQIGDAFQNQKASR

IIITTRQDQVASLANITRQLKLLPLKHNDAFDLLCRKAFNASMGCKCPQELEKLADDIVDRCQGLPLAIVSIGGL

LSSMPPTKYVWNETYKQLRSDLANNNHVQAILNLSYQDLLGELRNCFLYCSLFPEDHELSRETLVRLWVAEGFAV

QKEHNTPEEVAERYLRELIQRNMLEVLEYDELGRVSKCKMHDLVRDLALSIAKEEKFGYANDFGTMVKTNREVRR

LSSCGWKDKTMLKVKFLRLRTLVALGITTSSPQMLSSILSESSYLTVLELQDSEITEVPASIGNLFNLRYIGLQR

TRVKSLPESIGNLSSLHTLNIKQTKIQKLPRGIVKVKKLRHLLADRYEDENKSEFRYFIGVQAPKELSNLEELQT

LETVEASKDLAEQLKKLMQLRSVWIDNISAADCANLFATLSKMPLLSSLLLSASHEKETLCLENLKPSSENLHRL

IIRGCWAAGTLQSPIFRDHGKFLKYLAISWCHLQEDSLLLLAPHVPNLTYLKLNRVSSASSLVLSAGCFPQLKTL

ALKRMPDVNHLEIIGGALQHIEGLYVVSLPKLDTIPEGIESLRYLKKLWLLGLHKNFRSQWEKNGMQQKMQHVPE

LRVKD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	154	454	4.5e-79
NB-ARC [Pfam ls]	154	454	1.2e-79
LRR [Pfam ls]	569	591	2.3
LRR [Pfam ls]	592	614	1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	569	591	0.21
LRR [sensitive, ls]	569	591	2.3
LRR [sensitive, ls]	592	614	0.094
LRR [sensitive, ls]	592	614	1
LRR [sensitive, ls]	615	638	0.81
LRR [sensitive, ls]	615	638	8.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	4	701	1e-61
RPM1 [A. thaliana]	24	902	1e-106
Pib [Oryza sativa].	51	313	2e-13
I2 [L. esculentum]	68	676	3e-52
Pi-ta [Oryza sativa]	71	698	2e-41
N [N. glutinosa]	108	828	2e-20
L6 [L. usitatissimum]	151	505	3e-22
RPS2 [A. thaliana]	164	861	4e-44
M [L. usitatissimum]	165	505	5e-20
Pib [Oryza sativa].	167	876	3e-59
RPP5 [A. thaliana]	168	711	2e-12
Xa1 [Oryza sativa]	190	859	8e-40

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4133.m00182

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)