Report for 4168.m00130

 > 4168.m00130, length: 1274, copies: 2 

MAEYLVGPLLSKVLEKASSFLVDMYKVMDGMEDQRETLERLLPAILDVIQDAEEKKNHRSGLVCAWLKSLKKVSY

EAIDVFDEFKYESLWREAKKKGHRNHTMLGMDSVSLFPSRNPIVFRYRMGKKLRKIVEKIKELVSEMNSFGLVHQ

QETPKQWRKTDSIMVDFDKDIVIRSRDEEKKKIIRILLDKANNTDLTVLPIVGMGGLGKTTFAQLIYNDPEIEKH

FPLRRWCCVSDVFDVVTIANNICMSTERDREKALQDLQKEVGGKKYLIVLDDVWERDYDKWGKLKTCLKKGGMGS

AVLTTTRDAEVARIMVTGEVEVHNLENLGEIYMKEIILRRALTLPNNDEHFGILCKIVHRCHGSPLGAKAFGSML

STRTTMQEWNDVLTKSNICNEGEDKIFPILRLSYDDLPSHMKQCFAFCAIFPKDYEIDVETLIQLWLAHDFIPLQ

EEDHLETVAQNIFKELVWRSFFQDVNKISQREENVYRSQLRDRTTCKIHDLMHDISQSVMGKECLSIIGSSNLKN

LMREHPLYHVLIPYTSIALPDDFMGNEAPALRTLLFRGYYGNVSTSHLFKYNSLQLRALELPRREELPIRPRHLQ

HLRYLNLSDNSNIHELPADISTMYNLQTLNLSDCYNLVRLPKDMKYMTSLRHLYTNGCSKLKCMPPDLGQLTSLQ

TLTYFIVGASASCSTLREVHSLNLSGELELRGLENVSQEQAKAANLGRKEKLTHLSLEWSGEYHAEEPDYPEKVL

DALKPHHGLHMLKVVSYKGTNFPTWMTDLSVLENLTELHLEGCTMCEEFPQFIHFKFLQVLYLIKLDKLQSLCCE

EARDGKVQIFPALKEVKLIDLERFESWVETEGKQENKPTFPLLEEVEISNCPKLSSLPEAPKLKVLKLNENKAEL

SLPLLKSRYMSQLSKLKLDVLDKEAILQLDQIHESSLSNMELRHCNFFFSTIPSEPIIGIWKWFRQLVYLEIKSS

DVLIYWPEEEFLCLVSLKMLAIFGCVNLIGRTTLVKGEPTRCATDQFLPCLTSLSICCCDNLRELFVLPPSVTHI

HVSGCRNFEFIWGKGDIESENVHVEHHDTFTSSEHCNDLEYRSVPEQSSSAVNHPLPCLEMIHISFNDKMVELQN

LPPSLTSLEFHSCPKLQSLSGQLHALKFLDIRCCNKLESLNCLGDLPSLERLCLVSCKRLASLACGPESYSSLST

IAIRYCPAMNMKPLYERLRPRLDILKERDLSHAHAKCPYGGVIHFSLGTEHKRPTLWDPKSWKYAIPGCRWLQV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	155	330	3e-31
NB-ARC [Pfam ls]	155	452	1.6e-59
NB-ARC [Pfam fs]	356	452	1.8e-30
LRR [Pfam ls]	601	624	0.061
LRR [Pfam ls]	625	648	0.1
LRR [Pfam ls]	784	806	2.8
LRR [Pfam ls]	867	889	5.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	601	624	0.0026
LRR [sensitive, ls]	601	624	0.061
LRR [sensitive, ls]	625	648	0.0045
LRR [sensitive, ls]	625	648	0.1
LRR [sensitive, ls]	649	672	1.1
LRR [sensitive, ls]	649	672	26
LRR [sensitive, ls]	784	806	0.12
LRR [sensitive, ls]	784	806	2.8
LRR [sensitive, ls]	867	889	0.22
LRR [sensitive, ls]	867	889	5.2
LRR [sensitive, ls]	1129	1149	0.65
LRR [sensitive, ls]	1129	1149	15
LRR [sensitive, ls]	1150	1172	0.33
LRR [sensitive, ls]	1150	1172	7.7

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	5	699	4e-35
I2 [L. esculentum]	21	1216	4e-99
Pi-ta [Oryza sativa]	35	653	1e-22
Pib [Oryza sativa].	49	328	8e-15
RPS2 [A. thaliana]	122	903	1e-26
Xa1 [Oryza sativa]	124	883	2e-70
RPP5 [A. thaliana]	167	1185	7e-12
Pib [Oryza sativa].	176	654	3e-26
M [L. usitatissimum]	177	1165	7e-14
RPM1 [A. thaliana]	177	792	1e-36
N [N. glutinosa]	198	929	2e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4168.m00130

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)