Report for 4168.m00133

 > 4168.m00133, length: 986, copies: 2 

MAEFLVRPLLSAVTNKASSYLVYQYKVMEGMEQQRKALERMLPLILSVIQDTEEKRSKKPELSAWLDELKKVSYE

AIDVFDEFKYEALRREAKKKGHDATLGKGIVSLFPHRNPIVFRYRMEMDYSGLIKQQQETPKQWRQTDSIMVDTE

KGIISRSRDEEQKKIIKMLLDEARGKDLIVLPIVGMGGLGKTTFAQLIYNDPEIEKYFPLRRWCCVSDVFDVVTI

ANSICMSTERDREKALQDLQKEVGGKKYLIVLDHVWNRDSDKWGKLKTCFKKGGMGSVVLTTTRNAEVARIMVIG

EVPVHNLEKLGEAYLMEIIQSKAFSLSKKSDEHFEVLRKIVQRCDGSPLAAQSFGSVLFNRTTLQEWKDILAKSN

ICNEGEDIIFPILRLSYDDLPLHIKRCFAFCAIFPKDFEIDMETLINLWLAHDLIPLQEDDNIEMVAKHIFNELV

WRSFFQDVQKFPLQTTCKIHDLMHDIAQSAMGEECVSIVGRSDYRSKSLEHPRYHFYSLDDDNTILLDDFMRKQS

STLRTLLFDRDYIHISTSLLSKSSSLRALRLRYLNTESLPIRPRHLLHLRYLDISRNYHVKVLPEDICTLYNLQT

LILSDCKILVGLPKDMKYMTSLRHLYTNGCLRLKCMPPELGQLTSIRTLTYFVVGASSGCSTLRELHSLNLCGEL

ELRGLENVSQEDAKAANLRNKEKLARLSLVWNSECCVEEPNCNGKVLDALKPHHGLLMLNVIYSLIHWLRIWAIL

QKPDSRDMLILDVDDKEGRVQLDQIHESSLSELDLKHCNFFFPTSPSQPIIMFWKCLRQLVCLEIWFCGVLIYWP

EEEFLCLVSLKTLGIEGCDKLIGRPTLLLARRRARRPRYRSPRLLALKANLVAQIVATAGRSSGAGLTGLDGARR

QCSIGIGITRSPQRRRPTAYSGSPAPHVSMGAGSRRRCGGGRGRSSGGDASEKRAVRVVTVELDWAPNYMDKNTP

SLMMITLLIRF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	137	435	2.9e-55
NB-ARC [Pfam ls]	137	435	3.1e-55
LRR [Pfam ls]	573	596	1.4
LRR [Pfam ls]	597	620	1.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	573	596	0.06
LRR [sensitive, ls]	573	596	1.4
LRR [sensitive, ls]	597	620	0.073
LRR [sensitive, ls]	597	620	1.7
LRR [sensitive, ls]	621	644	2.1
LRR [sensitive, ls]	621	644	48

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	5	677	1e-35
RPM1 [A. thaliana]	19	627	8e-41
I2 [L. esculentum]	36	736	9e-89
Pib [Oryza sativa].	44	310	5e-11
Xa1 [Oryza sativa]	130	736	2e-55
Pib [Oryza sativa].	158	636	1e-28
Pi-ta [Oryza sativa]	158	669	4e-19
M [L. usitatissimum]	159	409	6e-11
RPS2 [A. thaliana]	171	615	3e-21
N [N. glutinosa]	180	725	2e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4168.m00133

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)