Report for 4174.m00135

 > 4174.m00135, length: 1322, copies: 1 

MAEVVIGPLVSMVKEKVSSYLLDQYKVMEGMEQQREILERKLPAILDVIEDAEEKGAFRPGVSAWLRALKKVAYE

ANDVFDEFKYEALRRDARKKGQFNMLGMDVVSLFPSYNPIMFRNKMGKKLQKIVGSIEVLVSEMNSFGFIHRQQA

PPSNQWRQTDSIMADSEKDIIRRSRDEEKKKIVKILHNHASSNRDLLVLPIVGMAGLGKTTFVQLIYNEPEIKNH

FELWRWCCVSDDFDVGNIANSICNSTEKDHEKALQDLQEAISGKRYLIVLDDVWNREADKWEKLKTCLKLGGKGS

AILTTTRDSQVARIMITGVVEAYNLEKLGEEYTKEIIQTRAFSLAGSDELSEIVQKFVDRCQGSPLAAKAFGSML

STKTSILEWKNIIAKSDICNEKTGILPILKLSYADLPSHMKQCFAFCAIFPKNYEINVENLIQLWMAHDFIPLEE

KYHFETTSGEEIFKELAWRSFFQDVKQTPLVCSNNGDRVQLRYTTTCKIHDLMHDIALYVMGKECVTITDRSYRK

ELLSNRSTYHLLVSRHRTGDHFDDFLRKQSTTLRTLLYPTWNTYGSIHHLSKCISLRGLQLYEIKELPIRPIKLK

HLRYLNLSENCDIKELPEDISILYHLQTLNVSHCIRLRRLPKDMKYMTSLRHLYTNGCKNLEYMPPDLGHLTSLQ

TLTYFVVGAISGCSTVRELQNLNLCGELELCGLENVSEAQASTVNIENKVKLTHLSLEWSNDHLVDEPDRQKKVL

DALKPHDGLLMLRIAFYKGNGFPTWMTDLSVLQNLAELYLVGCSMCEEFPQFCHLNVLKVLCLTSLDNLASLCSY

TTSNFFPALRELQLHRLERLERWSATEGEEVTFPLLESASIMNCPMLKSLPKAPKLRILKLVEEKAELSLLILRS

RFSSLSKLTLSVSDGNAGLELDQNYEAPLSEMELCGCAFFFPLGPSRPTVGIWKWFGQLVDLKIESCDVLVYWPE

EEFICLVSLKNLAIEKCNNLIGHRHVSGESTRVPSDQLLPYLTSLSIRQCKSLEEIFRLPPSLTSISIHDCRNLQ

LMWREDKTESESVIQVERRSEHCNDLASTIVPDQQSPSLRNNSLPCLESLTIGRCHRLVTLNHLPPTVKSLGIGQ

CDNLHSVQLDALNHSLKKLLIFGCEKLCSVSGQLDALKRLIIDHCNKLESLDCLGDLPSLRILRLEGCRRLQSVA

GCHGRYPLLQDITIKYCPAINVKPLYERLGQRIDSLEIRELSDVHSRNPEEGERRQKDCRNILDEIKVIYRQENN

KNTKTKKSIKEVGKPRVFDQYLEELGWPPYQPLWDFFGRYAYSVPTE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	154	451	2.7e-61
NB-ARC [Pfam fs]	175	451	3.1e-61
LRR [Pfam ls]	601	624	0.52
LRR [Pfam ls]	625	648	0.97

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	601	624	0.022
LRR [sensitive, ls]	601	624	0.52
LRR [sensitive, ls]	625	648	0.041
LRR [sensitive, ls]	625	648	0.97
LRR [sensitive, ls]	649	672	0.51
LRR [sensitive, ls]	649	672	12
LRR [sensitive, ls]	784	806	0.32
LRR [sensitive, ls]	784	806	7.4
LRR [sensitive, ls]	1016	1039	3.3
LRR [sensitive, ls]	1016	1039	77
LRR [sensitive, ls]	1096	1122	2.3
LRR [sensitive, ls]	1096	1122	55
LRR [sensitive, ls]	1161	1183	0.31
LRR [sensitive, ls]	1161	1183	7.3
LRR [sensitive, ls]	1184	1206	1.6
LRR [sensitive, ls]	1184	1206	37

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	16	655	5e-51
I2 [L. esculentum]	21	1198	1e-108
Pib [Oryza sativa].	62	333	6e-12
Xa1 [Oryza sativa]	120	1193	7e-71
Pib [Oryza sativa].	161	654	9e-30
N [N. glutinosa]	166	697	4e-15
Mla1 [Hordeum vulgare].	175	741	3e-30
Pi-ta [Oryza sativa]	175	653	3e-18
L6 [L. usitatissimum]	182	1196	2e-15
RPS2 [A. thaliana]	198	876	3e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4174.m00135

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)