Report for 4193.m00176

 > 4193.m00176, length: 826, copies: 1 

MAKMIEALGFGVLLKVLACSCATTSGSYSPSRCLLFLFLRYYLWFLRSEQLFSVPHCSCSCSCAISGSYLFLQSL

RSEQVSPELRPLAYMTILFLVLVLALLRLHLRARDGGGATGGGGSENNNINRGNTIASSSTGAFSSSLLAILRSP

LSDLYPRSGHPTASADLQRLKRLLSRIQATLEDAEEQGLQDNYVKLWLKELKDLALDAEDVLDDYRYELLQSQVQ

ELQGDYPRKRKHMDNDEEDNDSIDERINEMINRFEEISRDRDALKLRFEDGHKIVDRGNWMKSRPTSHLIDESLV

FGRIDEKEDIIKSVLSHQDMEPSGIVVLPIVGMGGIGKTTIAQMVYNDSRVRKHFEHSGWIHVSPTFDVHKLTIA

ITESLTMKNYGFTQLSLVHGVLLEEVQGKKLFFVLDDLWNECESSWQDFLSPLRHAQTVTILVTTRSKEVARLVQ

TVQLYHLGCIPDKDCWLLFQHYAFGNQHESEQSILVQIGRKILQKCGGLPLAVKSLGCLLRSTMDEHAWMEILES

ELWELDEEDNIFPALRLSYYWLPTRLKPCFLLCSLYPRNLGFTKDDIIQLWVAQGYIYSTNGKTCREIGNEYFNE

LHARSLIETYRKPVCWDINKRKLCLSRFTYNERQGFSSKKRERQGFSSRNEGRQGLSSKEKAREAMFYLKNKLQC

ETYLKKPSTSIGRFKLHDVIFDLAKSFTRGEQCTAMFGTTCMPPVADLKLQFPNPSFMYLRSLILNSNHDVSGMV

YSIGNLRHLRYLSLNCKMRELPESNSDCSKLQSLTLLILPSENMPCKPCHAFVADCPKLKQWCEKHEFNYFQMCL

L

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	284	587	7.9e-61
NB-ARC [Pfam ls]	284	587	4.5e-61

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	137	613	2e-70
Mla1 [Hordeum vulgare].	146	789	1e-27
RPM1 [A. thaliana]	166	650	4e-37
Pi-ta [Oryza sativa]	191	784	2e-26
Pib [Oryza sativa].	278	612	1e-24
Xa1 [Oryza sativa]	291	601	5e-50
L6 [L. usitatissimum]	292	586	1e-11
M [L. usitatissimum]	292	564	9e-15
N [N. glutinosa]	304	575	2e-11
RPS2 [A. thaliana]	327	609	1e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	165	187

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4193.m00176

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)