Report for 4197.m00366

 > 4197.m00366, length: 988, copies: 2 

MVGVTAIALMGVTNSLLGKLTVLLGREYSKLRGVQAGITSLRDELIIMKAALEDLSQLEDCNSQVKLWIHQLREL

SYDIEDCIDIFLHSLDHGSVSDGLINKIISWLRTLKVYRHTGKQIAALKERAVEVNDRRKRLKLDVDILTSKAVA

IDPRLPALFEEADRLVGIDGPRDELVEWLTKGNGFAQNRKVISIVGFGGLGKTTLACQVYQMIKSQFDCTAFVSV

SRNPNINKILRDILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNRYFIVIDDIWSKSAWQ

VIQCAFPYNSNASRIMTTTRIQDVAQSCCFTHEDYIYDIKPLGSDDSRKLFLKRIFGNEDNHPTELKEVTDEILR

KCSGLPLAIINIASLLSTKPVTKHEWKKVWNSIGSMLKQNQDLEIVKRILFLSYYDLPHQLKLCLLHISVFPEDH

VIKRERLIWRWIAEGLITEEQGLNLEEVGEKYFNELVNRNMVQPVDIDYTGRAKACRVHDIMLDLIICLSIEENF

ITIIDDQKSMLSTNKVRRLSLQTNHEKTNIWLGTNRFSQVRSLSVFGDLKQMPPFFDLQVLRVLDLEDCSSLKDG

DIENIASLFQLRYLSLRNCHISRVPAQIGKLQLLQTLDLRGTRIKELPETITQLQQLVRLLLGRFGVKMPNGISN

MRSLEELVVLDGSKNSVDVVVELGNLTNLKVFSIYWHPNGEIHDEGSYTKSIISSLCKIGEHNLRSLHITHGYSL

LLDFLVDSWYPPPCHLEMFRMVSHFYFPRLPNWMSSLSELTFLDINVKQFGVEDMKILQNMPALLSLKLYLEESP

QETLVISRCGFQSLKLFYFYPVNGELGLMFRKNKKDGLGLMFEEGATPKLQRLEFRYCAHDAMSAYGVDFDFGIK

QLTSLKHLGVSIHCRGARNWEVEAAESAIRNAVYLLPNHPTLEMYRLSEHEIVKDEEEWDDDTGYDGDEHSGSTR

WDQTNEYFQQQLS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	150	472	1.4e-68
NB-ARC [Pfam ls]	150	472	3.8e-69
LRR [Pfam ls]	610	632	0.067
LRR [Pfam ls]	633	655	0.97

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	585	609	0.49
LRR [sensitive, ls]	585	609	13
LRR [sensitive, ls]	610	632	0.0025
LRR [sensitive, ls]	610	632	0.067
LRR [sensitive, ls]	633	655	0.036
LRR [sensitive, ls]	633	655	0.97

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	11	970	1e-147
RPM1 [A. thaliana]	17	937	9e-82
Pi-ta [Oryza sativa]	27	706	1e-91
Pib [Oryza sativa].	47	351	5e-11
I2 [L. esculentum]	48	842	7e-43
Pib [Oryza sativa].	52	895	1e-80
L6 [L. usitatissimum]	108	446	2e-14
M [L. usitatissimum]	109	446	4e-15
RPS2 [A. thaliana]	118	643	3e-24
N [N. glutinosa]	122	446	3e-11
Xa1 [Oryza sativa]	191	705	1e-31

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	118	138

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4197.m00366

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)