Report for 4201.m00139

 > 4201.m00139, length: 1305, copies: 2 

MTELASGAVSSLLVVIRNEAALLGGVRDDVQFIKEEMESMHSFLGHLARSAPQGGEHDEQVRLLAQDCNNCIDLY

LYSGNPEIHRAKGRLRRHLWWAYWYLRKMVAQHRAAIQLCQLKDRARDVGERRMRYGVEVPATTKAAAPDAEGGY

AAGDDEDYEDHSARRAVYEPPALEDYVNAKLLEWAEEIPPDAIETLSIAIVAPDTDNKEVLDLARDTLVVPGNYY

HRSITVNVPAVHADFLPLRPKEILYYILRELEPGSQKHVTYQGDPWQDYYNIYCGKKRVLHKIKRNIEKMNVYKK

LEKIKSDIKDGQHKSDKQLLLQLQKKGVDQVDLHVLVQLLLLQSQQDQANNKAVDMYKLPEWNYDNIMKIARKLK

KHMEADEELNEQISVEKRTTKQGGGGENKEEKDKGDGDREEGKEENEKDKGEADGEGEQEEEMKDKEKGGEERKE

EPHHEKQEHKKEKEVKEEERKEEQNKEKEEREGTEEKQVGGGEKKEEKEDGDDDGVIDDNYDEEEEEEEEDDDPI

HLHEAQYVQILLEVFPKITSSKAQQQDKSEAKQATNTATTTLDEVRIKQMINDAKRDILRELRGGKSDKNEATGE

PDVPPDKNQPTGEHAGVPDQNGEACFEELELKIEEIKQELKEQLKIKGIVDKIKHHLQGECPLIILKVDDMMDGS

RWEEFRRALSLLECSADALIFTTESTEQAKGYCYPPREPIDHCSHVGLYHHTVLELTSKQKNKSNYDPRIFLDIL

KECEGHEFCMRIFTHAVYANPKKSTEELSKLHSTLQDSQKSFDAIAKNMLMYSYNDLPKEYKSCLLYLAIFPKGQ

KIRRSTLIGRWVTEGLTFKEDWPSSVRQANQCFDALIRRWLVYPADIGATGKIKSCEVGDLVHGFITTIARKQHI

VETRLSHHLARHFSIFNDLRLRSSDRIQTFFQSLSQSSRVSLLKVLDLEGCQCFGVKNQRYLKDICNKMLLLKYL

SLKGTNITQLPREINCLRELEVLDIRETMVPANATVNVLLLKLKRLLAGHIDPSLRNFRTSVHIPHRIDKMVNIE

VLSNVKAQRSDDLEDIGKLWQLRKLGVVINAKKSHLEKLLKAISDLHECIRSLTITIPTTTLEGTPSNPELPDHI

DSNLPHPKKLESLSISGARYLFPLLIKSDNNKLAKVTLSSTQLNQDDLEVLAKLPKLQCVRLRHISCTESMLIFK

KDDFKCLKYLLIEGFNLTNITFENRSACELEKMVLSSTSIESISGVDRLPKFKELELNNSPVPNEYTVFLFLKKQ

ILCSMLDWILKLNDELGKWGKQSFMQIKYA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	800	847	2.8e-12
LRR [Pfam ls]	971	993	4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	971	993	0.36
LRR [sensitive, ls]	971	993	4
LRR [sensitive, ls]	1157	1180	3.9
LRR [sensitive, ls]	1157	1180	43
LRR [sensitive, ls]	1229	1250	2.2
LRR [sensitive, ls]	1229	1250	25

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	644	1257	1e-17
Pi-ta [Oryza sativa]	645	1079	1e-21
Mla1 [Hordeum vulgare].	649	1223	8e-31
Pib [Oryza sativa].	649	1258	3e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	455	482
putative coiled-coil	620	648

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4201.m00139

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)