Report for 4201.m00145

 > 4201.m00145, length: 1422, copies: 2 

MTELAAGAVSSLLVVIRNEAVLLGGVRDDVQFIKEEMESMNSFLGHLARSAPQGGEHDEQVRTWMNQVRLLAQDC

NNCIDLYLYSGNPEIHRTKGRLRRHLWWVYWSLRKMVAQHRAAIQLRQLKDRARDVGKRRLRYGVEIPATTKAAA

PDATGGYVAEDDEEEDEDDREGQFAVATPTLAHHSARWPVFEPPSLDDYVEAKLLEWIGGVPGNAIVTLSIAIVA

PDADNKEVLAIAHETLVAPNYYYRRSIMVNVPAVHLDVLPLRPKEVLYYILRELEREEAAGSQKQPTDQGEWEEE

DPDPWQDYYKKCGIYRSKKSVLGKIKRNIKKMNIYEKLDKIKSDIREGQHKSNKLLLLQLQKKGADQVDLHVLLQ

LLVLQSQQDQAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAVRQGGGGEREEDEKD

ERGDGEEEGKEERRDMEKGGEERKEQQQEEQEKEGRKEEQNEVRKETEGRKEQVAGEEEEKEDHDADNDEDSNDD

DDDEEEEEEDDDDDEEEPIHLHEDQYEQILREVFTKNASSKAQEQDKLVAEQATKTAATTLDEERIKQMINEAKQ

DVLRELRGRETDKNQATGEPDVPPDKNQATGQHAVVLDQNEEAYFEEVEQKIEEIKQELKEQLKIKWIVDKIKHH

LQDQCPLIILKFDQMMDGSRWEEIRKALSLLELSADALIFTTGSTEQAKGYCYPPREPIDHCSLVGLYYYTVLKL

TSKHKNEDNDNAQIFRGILEECEGHEFCMKIFTHAVYANPKRSNEELRKLHSTLQSPKKSFDTIAKKMFMYSYND

LPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEGLTFKEDWPSSVYQANRCFDALIRRWLVYPDDISATGKIKSC

VVGDPVHGFITAIARKQHIVETRLSHHLARHFSIFNDLRLRSSDRIGTFFQGLSRSSRVSLLKVLDLEGCQCFAS

KNQRYLKDICNKMLLLKYLSLKGTDITQLPKEINCLRELEVLDIRETKVPANATVHVLLLKLKRLLAGASQIDPT

PRNFVTNVRIPSRIDKMINIEVLSNVKAQQHDNLEDIGKLCQLRKLGVVIDGKKSHLGSLLKAISDLHASLRSLS

ITIPTTTLEVTPSSPELQDIASRLKDHPEFLESLSISGAKHLFPLLTKGGNKKLAKVTLSNTPLNQDDLKFFAQL

PMLQCVRLRHISCTESVLNFKKDDFKCLKYLLIEGSNLTNITFEDEAACELEKMVLSSTCIESISGVHGLPKFEE

LELNSSSCGRLLSSCFYNVERIAKLTLRGTLLKQGDLRIIARELNICCLVLLENSFDISQNQITFEKEEFIWLKL

LSVDCSTITKINFITGSAPRLKKIVWSSFTSLSGINNLPRLKELEFNGYSVPNDVEEAIKNNKSINLKHNKP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	820	866	8.5e-13

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	990	1012	0.51
LRR [sensitive, ls]	990	1012	5.6
LRR [sensitive, ls]	1178	1201	3.2
LRR [sensitive, ls]	1178	1201	35
LRR [sensitive, ls]	1250	1271	1.5
LRR [sensitive, ls]	1250	1271	16

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	652	1096	1e-17
Mla1 [Hordeum vulgare].	668	1247	1e-27
Pib [Oryza sativa].	668	1279	2e-22
RPM1 [A. thaliana]	764	1278	3e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	639	666

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4201.m00145

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)