Report for 4227.m00182

 > 4227.m00182, length: 798, copies: 1 

MAALSVFASSILSKVTTFAVEYALDDIKLACTVRSEIEKLRNSLKAICAVLKDAERKQSTSSSLKHWLENLKDIV

YDIDDVLDDVGTRALQQKVGKGEIRTYFAQLFIFPFELGRKIRRVRERLNEISALKRNFDLKEEPIDTPSDRIVQ

RETYSIVDERKIVGRDKAKNDIVKVISEAAESNSDTLSVLPLIGMGGVGKTALAKLVFNDKRTKEKFDKMLWACV

ANVSDLKHIVDIIIQSDSGESNKQLTLEALQKKLHELSGDKRYLLVLDDISHDNINDWEELMNLLPSGRSGSMIL

ITTRLSKIASVLKTIEPYEVPKLPHEECMKVFARYAFKGQKAKDTELLKIGESIVQKCDGLPLAVRTLGSLLSME

DISKWQEVKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLIMYWMAMGLLNTASGSKEAIR

MGERYFSELAGRSLFQDYVFSHDGTISHCKMHSFVHDLAISVSPNEHATISCENFSASKRVKHLVWDQKEFSKDL

KFPKQLRRARKARTFASRHNYGTVSKSFLEDLLATFTRLRILVFSEVEFEELPSSIGNLKHLRYLDLQWNMKIKY

LPNSLCKLVNLQTLQLAWCKELEELPRDVKRLVSLRYLILTSKQQYLPNDALMGWTSMVFLQISACPMLTSLTEG

FGSLSALRELFVFNCPNLPSLPSSMNRLVTLQKLVIHNCDELNLMEPKEAMGGMKSLKSIELVGLPKFETFPDSF

ASAASTLEYLKVSDCKEFKKLPDFIQRFSSLKKIEIPERRQYSSKTWA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	145	444	3.7e-59
NB-ARC [Pfam ls]	145	444	2.6e-59
LRR [Pfam ls]	586	609	0.38
LRR [Pfam ls]	610	633	5.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	563	585	0.75
LRR [sensitive, ls]	563	585	17
LRR [sensitive, ls]	586	609	0.017
LRR [sensitive, ls]	586	609	0.38
LRR [sensitive, ls]	610	633	0.24
LRR [sensitive, ls]	610	633	5.5
LRR [sensitive, ls]	657	680	0.88
LRR [sensitive, ls]	657	680	20
LRR [sensitive, ls]	681	701	1.6
LRR [sensitive, ls]	681	701	37
LRR [sensitive, ls]	731	754	3.4
LRR [sensitive, ls]	731	754	76
LRR [sensitive, ls]	756	779	0.35
LRR [sensitive, ls]	756	779	7.8

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	21	785	1e-40
RPS2 [A. thaliana]	26	791	5e-30
RPM1 [A. thaliana]	33	639	2e-50
I2 [L. esculentum]	37	645	3e-80
Pib [Oryza sativa].	51	311	1e-13
Pi-ta [Oryza sativa]	67	724	2e-30
Xa1 [Oryza sativa]	112	788	6e-54
L6 [L. usitatissimum]	114	418	6e-16
M [L. usitatissimum]	117	418	3e-21
N [N. glutinosa]	117	786	2e-27
Pib [Oryza sativa].	151	790	2e-42
RPP5 [A. thaliana]	563	747	8e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	35	57

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4227.m00182

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)