Report for 4235.m00203

 > 4235.m00203, length: 978, copies: 1 

MAAPVPCLPDQASALLQLKRSFNTTVGDYSAAFRSWVAGTDCCHWNGVRCGGSDGHITSLDLSHRDLQASGLDDA

LFSLTSLEYLDISWNDFSASKLPAIGFEKLAELTHLDLCTTNFAGRVPVGIGRLKSLAYLDLSTTFFLYEQDEEN

SITYYYSETMSQLSEPSLETLLANLTNLEELRLGMVNMSSNGARWCDAIARSSPKLRVISMPYCSLSGPICHSLS

ALRSLSVIELHYNHLSGPVPELLATLSNLTVLQLSNNMLEGVFPPIIFQLQKLTSISLTNNLGISGKLPNFSAHS

YLQSISVSNTNFSGTIPASISNLKYLKELALGASGFFGMLPSSIGKLKSLHILEVSGLELQGSMPSWISNLTFLN

VLKFFHCGLSGPIPASVGSLTKLRELALYNCHFSGEVAALISNLTRLQTLLLHSNNFIGTVELASYSKLQNLSVL

NLSNNKLVVVDGENSSSVVSYPSISFLRLASCSISSFPNILRHLPYITSLDLSYNQIQGAIPQWTWETWTMNFFL

LNLSHNNFTSIGSNPLLPLYIEYFDLSFNNFDGAIPVPQKGSITLDYSTNRFSSMPLNFSSYLKNTVVLKASDNS

LSGNIPSSICDAIKSLQLLDLSNNNLTGSMPSCLTQDASALQVLSLKQNHLTGELPDNIKEGCALSALDFSGNMI

QGQLPRSLVACRNLEILDIGNNQISDHFPCWMSKLPELQVLVLKSNKFHGKIMDPLYTRDGNNCQFSMLRIADIA

SNNFSGTLPEELFKMLKSMMTRSDNETLVMEHQYSHGQTYQFTAALTYKGNDITISKILRSLVLIDVSNNEFDGS

IPSSIGELALLHGLNMSHNMLTGPIPTQFDNLNNLESLDLSSNKLSGEIPQELASLNFLATLNLSYNMLAGRIPQ

SSHFSTFSNASFEGNIGLCGPPLSKQCSYRSEPNIMPHASKKDPIDVLLFLFTGLGFGVCFGITILVIWGSNNRK

QQA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	81	106	3.2
LRR [Pfam ls]	229	252	0.21
LRR [Pfam ls]	253	276	0.072
LRR [Pfam ls]	277	300	3.3
LRR [Pfam ls]	301	324	1.4
LRR [Pfam ls]	349	372	4.1
LRR [Pfam ls]	397	420	0.67
LRR [Pfam ls]	446	466	4.8
LRR [Pfam ls]	473	495	1.4
LRR [Pfam ls]	496	520	1.3
LRR [Pfam ls]	615	635	0.012
LRR [Pfam ls]	688	711	0.16
LRR [Pfam ls]	811	834	2.9
LRR [Pfam ls]	835	858	2.4
LRR [Pfam ls]	859	882	0.0016

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	56	80	0.29
LRR [sensitive, ls]	56	80	6.6
LRR [sensitive, ls]	81	106	0.14
LRR [sensitive, ls]	81	106	3.2
LRR [sensitive, ls]	107	130	1.6
LRR [sensitive, ls]	107	130	35
LRR [sensitive, ls]	205	228	0.32
LRR [sensitive, ls]	205	228	7.3
LRR [sensitive, ls]	229	252	0.0096
LRR [sensitive, ls]	229	252	0.21
LRR [sensitive, ls]	253	276	0.0032
LRR [sensitive, ls]	253	276	0.072
LRR [sensitive, ls]	277	300	0.15
LRR [sensitive, ls]	277	300	3.3
LRR [sensitive, ls]	301	324	0.064
LRR [sensitive, ls]	301	324	1.4
LRR [sensitive, ls]	349	372	0.18
LRR [sensitive, ls]	349	372	4.1
LRR [sensitive, ls]	373	396	0.68
LRR [sensitive, ls]	373	396	15
LRR [sensitive, ls]	397	420	0.03
LRR [sensitive, ls]	397	420	0.67
LRR [sensitive, ls]	421	445	0.71
LRR [sensitive, ls]	421	445	16
LRR [sensitive, ls]	446	466	0.21
LRR [sensitive, ls]	446	466	4.8
LRR [sensitive, ls]	473	495	0.062
LRR [sensitive, ls]	473	495	1.4
LRR [sensitive, ls]	496	520	0.059
LRR [sensitive, ls]	496	520	1.3
LRR [sensitive, ls]	522	545	0.38
LRR [sensitive, ls]	522	545	8.5
LRR [sensitive, ls]	590	614	0.6
LRR [sensitive, ls]	590	614	14
LRR [sensitive, ls]	615	635	0.00054
LRR [sensitive, ls]	615	635	0.012
LRR [sensitive, ls]	640	660	0.39
LRR [sensitive, ls]	640	660	8.9
LRR [sensitive, ls]	664	687	0.63
LRR [sensitive, ls]	664	687	14
LRR [sensitive, ls]	688	711	0.0069
LRR [sensitive, ls]	688	711	0.16
LRR [sensitive, ls]	743	767	0.56
LRR [sensitive, ls]	743	767	13
LRR [sensitive, ls]	811	834	0.13
LRR [sensitive, ls]	811	834	2.9
LRR [sensitive, ls]	835	858	0.11
LRR [sensitive, ls]	835	858	2.4
LRR [sensitive, ls]	859	882	7.2e-05
LRR [sensitive, ls]	859	882	0.0016
LRR [sensitive, ls]	883	905	0.34
LRR [sensitive, ls]	883	905	7.5

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	1	455	2e-29
Cf-9 [L. pimpinellifolium]	4	971	1e-111
CLV2 [A. thaliana]	10	677	6e-44
FLS2 [A.thaliana]	43	727	7e-59
FLS2 [A.thaliana]	52	658	2e-42
FLS2 [A.thaliana]	128	949	4e-77
Xa21 [O. sativa]	157	704	6e-50
Xa21 [O. sativa]	213	727	1e-43
CLV2 [A. thaliana]	277	959	5e-58
Xa21 [O. sativa]	305	977	4e-52

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	947	969	out -> in

Report for 4235.m00203

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)