Report for 4235.m00214

 > 4235.m00214, length: 999, copies: 1 

MSSSMRVALLAMLPILLVDTQSMAAPIQCLPDQAAALLQLKRSFDATVGGYFAAFRSWVAGADCCHWDGVRCGGD

DGRAITFLDLRGHQLQAEVLDTALFSLTSLEYLDISSNDFSASMLPATGFELLAELTHLDLSDDNFAGRVPAGIG

HLTNLIYLDLSTSFLDEELDEENSVLYYTSYSLSQLSEPSLDTLLANLTNLQELRLGMVDMSSNGARWCDAIARF

SPKLQIISMPYCSLSGPICRSFSALKSLVVIELHYNYLSGPIPEFLADLSNLSVLQLSNNNFEGWFPPIIFQHKK

LRGIDLSKNFGISGNLPNFSADSNIQSISVSNTNFSGTIPSSISNLKSLKELALGASGFSGELPSSIGKLKSLDL

LEVSGLELVGSMPSWISNLTSLTVLNFFHCGLSGRLPASIVYLTKLTKLALYNCHFSGEVANLVLNLTQLETLLL

HSNNFVGTAELASLAKLQNLSVLNLSNNKLVVIDGENSSSEATYPSISFLRLSSCSISSFPNILRHLPEITSLDL

SYNQIRGAIPQWVWKTSGYFSLLNLSHNKFTSTGSDPLLPLNIEFFDLSFNKIEGVIPIPQKGSITLDYSNNQFS

SMPLNFSTYLKKTIIFKASKNNLSGNIPPSICDGIKSLQLIDLSNNYLTGIIPSCLMEDASALQVLSLKENNLTG

KLPDNIKEGCELSALDFSGNLIQGKLPRSLVACRNLEILDIGNNQISDSFPCWMSKLPQLQVLVLKSNRFIGQMD

ISYTGDANNCQFTKLRIADIASNNFSGMLPEEWFKMLKSMMTSSDNGTSVMESRYYHGQTYQFTAALTYKGNDIT

ISKILTSLVLIDVSNNDFHGSIPSSIGELALLHGLNMSRNMLTGPIPTQFGNLNNLESLDLSSNKLSNEIPEKLA

SLNFLATLNLSYNMLAGRIPQSSHFSTFSNASFEGNIGLCGAPLSKQCSYRSEPNIMPHASKKDPIDVLLFLFTG

LGFGVCFGITILVIWGSNKRKQQA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	104	129	0.83
LRR [Pfam ls]	130	153	4.5
LRR [Pfam ls]	252	275	0.15
LRR [Pfam ls]	324	347	0.21
LRR [Pfam ls]	396	419	4.6
LRR [Pfam ls]	444	468	5.5
LRR [Pfam ls]	469	489	2
LRR [Pfam ls]	496	518	0.23
LRR [Pfam ls]	519	543	3.1
LRR [Pfam ls]	637	658	0.17
LRR [Pfam ls]	710	733	0.12
LRR [Pfam ls]	832	855	2.3
LRR [Pfam ls]	856	879	5
LRR [Pfam ls]	880	903	0.0069

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	79	103	2.9
LRR [sensitive, ls]	79	103	66
LRR [sensitive, ls]	104	129	0.037
LRR [sensitive, ls]	104	129	0.83
LRR [sensitive, ls]	130	153	0.2
LRR [sensitive, ls]	130	153	4.5
LRR [sensitive, ls]	228	251	0.36
LRR [sensitive, ls]	228	251	8.1
LRR [sensitive, ls]	252	275	0.0066
LRR [sensitive, ls]	252	275	0.15
LRR [sensitive, ls]	276	299	0.98
LRR [sensitive, ls]	276	299	22
LRR [sensitive, ls]	300	323	0.51
LRR [sensitive, ls]	300	323	11
LRR [sensitive, ls]	324	347	0.0095
LRR [sensitive, ls]	324	347	0.21
LRR [sensitive, ls]	348	371	0.81
LRR [sensitive, ls]	348	371	18
LRR [sensitive, ls]	372	395	0.44
LRR [sensitive, ls]	372	395	9.9
LRR [sensitive, ls]	396	419	0.21
LRR [sensitive, ls]	396	419	4.6
LRR [sensitive, ls]	420	443	0.37
LRR [sensitive, ls]	420	443	8.3
LRR [sensitive, ls]	444	468	0.24
LRR [sensitive, ls]	444	468	5.5
LRR [sensitive, ls]	469	489	0.09
LRR [sensitive, ls]	469	489	2
LRR [sensitive, ls]	496	518	0.01
LRR [sensitive, ls]	496	518	0.23
LRR [sensitive, ls]	519	543	0.14
LRR [sensitive, ls]	519	543	3.1
LRR [sensitive, ls]	544	564	2.7
LRR [sensitive, ls]	544	564	60
LRR [sensitive, ls]	567	589	0.54
LRR [sensitive, ls]	567	589	12
LRR [sensitive, ls]	612	636	4.1
LRR [sensitive, ls]	612	636	91
LRR [sensitive, ls]	637	658	0.0078
LRR [sensitive, ls]	637	658	0.17
LRR [sensitive, ls]	662	682	0.29
LRR [sensitive, ls]	662	682	6.6
LRR [sensitive, ls]	686	709	0.35
LRR [sensitive, ls]	686	709	7.8
LRR [sensitive, ls]	710	733	0.0054
LRR [sensitive, ls]	710	733	0.12
LRR [sensitive, ls]	764	788	0.42
LRR [sensitive, ls]	764	788	9.5
LRR [sensitive, ls]	832	855	0.1
LRR [sensitive, ls]	832	855	2.3
LRR [sensitive, ls]	856	879	0.22
LRR [sensitive, ls]	856	879	5
LRR [sensitive, ls]	880	903	0.00031
LRR [sensitive, ls]	880	903	0.0069
LRR [sensitive, ls]	904	926	0.34
LRR [sensitive, ls]	904	926	7.5

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	5	994	1e-107
CLV2 [A. thaliana]	31	699	4e-43
Xa21 [O. sativa]	36	555	1e-41
FLS2 [A.thaliana]	65	998	2e-67
Xa21 [O. sativa]	78	435	4e-27
CLV2 [A. thaliana]	108	407	9e-11
CLV2 [A. thaliana]	301	980	2e-57
Xa21 [O. sativa]	325	998	3e-51
CLV2 [A. thaliana]	359	922	6e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	968	990	out -> in

Report for 4235.m00214

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)