Report for 4240.m00173

 > 4240.m00173, length: 902, copies: 2 

MASSSSGVMNSLLTKLATLIREECYSKLKGVRNEVVSLEGELRSMEALLEKLACMDELDVQVKEWRDQVREMSYD

IEDCIDDFVHRLGKYDVRSGLIKKTTELPRKLRARHQIAKKIEEIKNHVKEVNERRMRYKLDEYTSKSSCEPIDP

RVVTIYANTADLVGIDIPRDDVVKLLMGDDEQQLKGFGGLGKTTLANEVYRKLDGHFHCRAFVSVSQRSDITRLM

SKVLSELTGQYNLHIGELDNLLKVIREYLQDKRYLFMCRYFIVIDDLWDSSAWNVIRCAFPENNHGSRVLTTTRI

YSVAISCCSNKKEYVYNMSPLGEVDSRRLLFSRIFGTGEACSEVFEEISGDILKRCGGLPLAIMSISSLLAGQSK

TKWEYVRNSLGSMFERNPTLEDMKHILDFSYRNLPQHLKTCLLYLSIYPEDHTIERNDLVRQWMAEGFVSRTHGL

DSEDVAQSYFNELINRSMIQPVQVDYNDEVLSCRVHDIMLDFIRSKSAEENFIVVLDHPQVVVGAHKKIHRVSVQ

YDADEEHGIISTTILGSLSQVRSIAVFRSSFRPSLLELKHLRVLHLELPMREVMDLTGICGLSLLRYLKIRGYYA

CFKLGMKIRQLLHLETFDLGESFVPRIAIPSDIVHLPCLLHLVIPCGTTLPDGIGSLKSLRTLTSLDLALNSVNN

IECLGELTNMRHLGVHLGDIGLLADADVARRLDALCSSLESLSRSSSCLRSLDLDSHFILVSFDRLSDLCPSPRH

LRRLNLYGCRLPRIPRWISQLHNLYSLLPSLVQLDLGIRECPKERIVVSGAGTAFRALRDLTFSCPKPRLAFLVG

AMPRLQRLDLRFYVNGWEQQGGTCLPVGIENLPSSGLKIHLVNVFTDSGSQDVISAKSVLRRTFEVHQPSADLIF

HF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	146	449	1.3e-51
NB-ARC [Pfam fs]	161	449	2.8e-52
LRR [Pfam ls]	750	772	0.056

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	613	637	3.6
LRR [sensitive, ls]	613	637	80
LRR [sensitive, ls]	662	683	0.67
LRR [sensitive, ls]	662	683	15
LRR [sensitive, ls]	750	772	0.0025
LRR [sensitive, ls]	750	772	0.056

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	3	683	1e-106
Mla1 [Hordeum vulgare].	6	900	1e-123
RPM1 [A. thaliana]	28	869	3e-53
I2 [L. esculentum]	38	836	3e-38
M [L. usitatissimum]	54	423	5e-13
Pib [Oryza sativa].	62	313	5e-16
RPS2 [A. thaliana]	109	500	6e-25
Xa1 [Oryza sativa]	111	689	7e-29
Pib [Oryza sativa].	160	642	2e-53

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	26	53

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4240.m00173

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)