Report for 4240.m00175

 > 4240.m00175, length: 1260, copies: 1 

MASASSGAINSLLSKLAALMGEEYGKLRGVRKEVASLEDELRSMRALLEKLAAMDELDGQAKEWRDQVREMSYDI

EDCIDDFLHQLDKNNGSNGFVHKTVKFLKEIRARHQIGNSIQEIKNLVKEVSERRMRYKIDEYTPNSRHVPVDPR

VVAIYSEAAGLVGIDAPRDELLKLLMGEEQGLKVASIVGFGGVGKTTLAKEVYRKLERKFDCGAFVSVSQKPDIP

KLLNRILLEVRGQCSVHNTNLDGILNDIINSLRDKRYFIVVDDLWDSFEWNIIRCAFPENKYGSRVLTTTRILSV

ATTCCSNSQAYIYKMKSLTDQNSRNLFYSRIFGSHEAFPNKFEEVTTNILKKCDGLPLAIISIASLLSGQPYITW

EYVNNSMRSMFEGNPTLGGMRQILELSYNNLPHHLKTCLLYVSMYPEDYIIKKNDLVRQWIAEGFVSKISGLDVD

DVAGSYFNELINRSMVQPIYTDYNDEVLSCRIHDIMLEIIRSKSAEENFFSVIDDRTVAPGLHTKIRRVSFHYAD

EEDGVIPASNNRSLSQVRSAAFFKNSFRPSSLEFKYVRVLLLEFPRRWRGKRVDLTGICGFSLLRYLKISHDVKL

VLPSQLGGMWHLETIELHTSEELSIPSDIVSLPHLSQLFIPANTVLPNGIGDLKSLRNLEWFDLIKNSMSNIECL

GELTNLRDLKLDCSSSEPLEDVTSRIEALRCSLERLSRSSGSLRNIVLLKHFPSWLQVDGLSTLSPPPRHLWKLH

LERCLFSRIPSWIVQLRDLHSLKLTIRKALPMDDGVTILACLPSLVHLDLRLLVCPEERVIFSGTGMAFRALKHL

LFRCHKPFLDFKACSMPRLQKLELWLDATGCFFHLSQNKFTIASEFVKIQMGSWVIGPAPEISELDERAAMYRDK

RKAMDYVRNWICPGCRKEYEPIKNMLVDLPPFGCVDCGLKNDAAYEWKITQCTLNGISLDFKTYDQKLEPHCTLY

AITAVIDCTRRLEGAQKGFVFSAPFDINEMVETYNKRTGFKLGNEPQDKLYETYDNCPIVMEVLKSDGIAILIGA

SDVTTTPVPRLKIQSYFRVDPKDVLYITRLLAGGFPLVAGIRHGFLFNYLSDGQYYCAPTCENTSDAHAVALIGC

GVGSNGNKTETFYKIQSARNARGGFRPSVIFTGLNIRNDKDFQAGGTEDGEAARLRSPSSRQIWLREGASGHPPL

LPLYTAEGRAQPSPSPPPLGRTVSTRRCRPSTAASPLALPPRREESEREDQEREERKMRE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	144	446	1e-59
NB-ARC [Pfam fs]	161	446	2.4e-60

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	4	681	1e-108
RPM1 [A. thaliana]	5	798	1e-61
I2 [L. esculentum]	6	777	6e-42
Mla1 [Hordeum vulgare].	6	767	1e-121
RPS2 [A. thaliana]	20	677	7e-23
Pib [Oryza sativa].	51	330	3e-18
Xa1 [Oryza sativa]	110	709	6e-38
Pib [Oryza sativa].	156	638	7e-54
L6 [L. usitatissimum]	157	420	2e-15
M [L. usitatissimum]	157	420	4e-18
N [N. glutinosa]	161	427	1e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	25	54

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4240.m00175

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)