Report for 4273.m00260

 > 4273.m00260, length: 676, copies: 1 

MTCKNIYKLEGLKEDAAFALFKNKVFVDSSNIDLDLDMITQAKLIIKECDGHPLAITNIAGFLARKQKTTTEWKK

LNDNFTSGSVNKENLEMISTTLEPSYNNLSYHLKLCLLYLSVFPKGHNIRRKRIVRRWVAEGYISKTHSLSAEEV

GESYFAELINRSIIQPSEPVPAHNVGNIEYCRVHNLMHKISVSKSMEENHGFVLEVSSNNEGTVRHLSIINTGET

NKNALKCVDLTHVRSVTIFGECRASLDFSMMRMLRILDLEGTSGLKDRDLSQIGNFLHLRYLSLRGCTDIYHLPN

SLGNLWDIQMLDVSGTSIIKLPKTITKLKKLHYLRAGHVPKDDATSSIELKESSDLSKMEHEPINDLEIPDVEVK

SVQFGMTVLDTTKAYITKTMQNNDNVNKHDIFHKYCKVLLPGIPQGLDMYGVKAPEGIGQLNDLHTLGVVNVAAG

KVILRELEKLKKLHKLGLTGVNKKNSQAILSAIANLALLHSLSLQAEGEPGLQGCLDHTFAPPSKLQSLKIYGNL

VTLPIWITQLQNLAKLKLRSTQLKLAPSMEILGKLPHLVILRLWKNSFLQSKKILFDFQQGTFPSLVVMELKDQE

GLKSLNFLQGAMPRLELLQINNCMHIDNNGFFGVSSLPSLKEVMLMGDHNEELMKNLRDQLALNQNQPVLRGHDH

L

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	7	144	4.5e-28
LRR [Pfam ls]	283	306	1.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	283	306	0.052
LRR [sensitive, ls]	283	306	1.1
LRR [sensitive, ls]	307	329	0.64
LRR [sensitive, ls]	307	329	13
LRR [sensitive, ls]	515	542	0.82
LRR [sensitive, ls]	515	542	17
LRR [sensitive, ls]	614	641	2.9
LRR [sensitive, ls]	614	641	59

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	3	385	2e-18
Pi-ta [Oryza sativa]	4	319	1e-30
Mla1 [Hordeum vulgare].	5	334	5e-39
Pib [Oryza sativa].	5	670	1e-121
RPM1 [A. thaliana]	7	667	4e-39
I2 [L. esculentum]	8	334	4e-19
Xa1 [Oryza sativa]	8	655	2e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4273.m00260

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)