Report for 4274.m00155

 > 4274.m00155, length: 1454, copies: 1 

MIWRVGNGNSIGIWDDPWIPRDWTRKTVSNKGTNMLTRVNELIDPYTGDWDEMLVRQTFCEEDVKAILSIPVQVD

RDDVVGWHYDKRGLFSMKSAYKVQKEIERRNSRSAPASSSGGAQSDQVWKRLWKLNCPNKMKHFMWRLGHDTIAL

QMTLKRRGMDIDTKCLIFSGSHFFFKCKEVKHIWRDLNLEEVRCKLAAVQSALAVLQAILELEEKQRIHAIVLLY

SWWNERNIHREGEGRRGANILAFSIQKQADEFKDLAPQRGSGQAARSNRKWARPTGNVLKINVDGAFKPQEQKGG

WGFVIRDTEAQVIQAGAGFSSRLQDAFHAEVLAGVKGLKAATSLGMAYIHLESDSMMLIQALKGEDLQFAPLGTL

LFEAKNIIASSFLTCKFSFCPRDCNKLADAIASIGCNSPPNTDLFGDGAPPGVEEFDVFYKMDAYYREKRRLGSQ

VGGATQPVTAVSKDFTAALFRFFWPYNAHYCILIYPEFQTILNLIKKRSIMRPSQFPCSRSSSKLPTDLLGFALL

TVLCLASSTDSCIDQEKSVLLQFLAGLSGDGGLSASWRNGTNCCTWEGITCNADMRIADILLASKALEGQISPSL

GSLTGLLQLNLSHNSLSGELPLEGLVSSSSIVVLDVSFNHFSGALQELFIQSTIWPLQVLNISSNLFTGKFPTTT

CKVMNNLVALNASNNSFIGQIPSSLCINSPSFGVLDLSSNQFGGSIPSDIGNCSMLRVLKGGRNNFKGPLPDELF

NASSLEHLSFPNNDLNGPLPPAPAQIRRRASSSSSSLASRRTVASPSWQNDTDCCTWEGITCGTDATITEISLAS

KGLEGQISPYLANLTGLLHLNLSHNSLSGELPLEELVSSSSIVILDVSFNHLSGALKELSAHTTIRPLQVLNISS

NLFAGQFPSTTWKVMNNLVALNASNNSFVGQILSSLCINAPSFAVLDLSFNQFGGSIPLDISNCSTLRVLKGGHN

NFHGALPDELFNASSLEYLSFPDNFLNGVLDDANIIKLSKLSILDLEQNMFSGKIPKSIGQLKRLKELRLGENKL

YGELPSTLGNCTNLKILDLKFNNLSGDLGKIDFSSLSNLTTIDLLVNNFSGTVPESIYACTNLIVLRIARNNFHG

EFSQTMNRLRSLVFLSVADNAFTNIRTALHIFKTFRNLKMLLIGGNFKNEVLPEDETIDGFENLQHFSISGSSLY

GKMPVWLSKLTNLEKLHLYDNQLTGSVPVWIKNLNFLFHLDITNNNFTGEILTTLIQLPVLKSKKMVSILNERVS

KIIVCSGSRHQLLMGPATLNIGRNGFTGVIPPEIGQLKALDMLDLSYNSFSGEIPQAICKLTDLEMLDLSNNNLT

GTIPLQLSKLHFLSAFNVSNNDLEGPIPTGGQFDTFDNSSFDGNPKLCGPMISRQCNSAKAIPTPAFYTDNFSVN

IFGITVGLFFALGVLLDQMLLSRLGFLQL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	605	626	6.6
LRR [Pfam ls]	681	705	5.7
LRR [Pfam ls]	706	729	1.9
LRR [Pfam ls]	841	865	6.1
LRR [Pfam ls]	942	965	2.1
LRR [Pfam ls]	1015	1038	1.4
LRR [Pfam ls]	1039	1062	1.4
LRR [Pfam ls]	1063	1090	0.082
LRR [Pfam ls]	1212	1235	0.0098
LRR [Pfam ls]	1314	1337	0.4
LRR [Pfam ls]	1338	1361	0.01

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	605	626	0.32
LRR [sensitive, ls]	605	626	6.6
LRR [sensitive, ls]	630	653	0.84
LRR [sensitive, ls]	630	653	17
LRR [sensitive, ls]	656	680	0.53
LRR [sensitive, ls]	656	680	11
LRR [sensitive, ls]	681	705	0.27
LRR [sensitive, ls]	681	705	5.7
LRR [sensitive, ls]	706	729	0.093
LRR [sensitive, ls]	706	729	1.9
LRR [sensitive, ls]	754	777	1.6
LRR [sensitive, ls]	754	777	34
LRR [sensitive, ls]	841	865	0.3
LRR [sensitive, ls]	841	865	6.1
LRR [sensitive, ls]	866	888	0.89
LRR [sensitive, ls]	866	888	19
LRR [sensitive, ls]	892	916	0.91
LRR [sensitive, ls]	892	916	19
LRR [sensitive, ls]	917	941	1
LRR [sensitive, ls]	917	941	22
LRR [sensitive, ls]	942	965	0.1
LRR [sensitive, ls]	942	965	2.1
LRR [sensitive, ls]	990	1014	2.8
LRR [sensitive, ls]	990	1014	57
LRR [sensitive, ls]	1015	1038	0.066
LRR [sensitive, ls]	1015	1038	1.4
LRR [sensitive, ls]	1039	1062	0.066
LRR [sensitive, ls]	1039	1062	1.4
LRR [sensitive, ls]	1063	1090	0.0039
LRR [sensitive, ls]	1063	1090	0.082
LRR [sensitive, ls]	1112	1135	4.4
LRR [sensitive, ls]	1112	1135	92
LRR [sensitive, ls]	1136	1158	1.8
LRR [sensitive, ls]	1136	1158	38
LRR [sensitive, ls]	1188	1211	0.58
LRR [sensitive, ls]	1188	1211	12
LRR [sensitive, ls]	1212	1235	0.00047
LRR [sensitive, ls]	1212	1235	0.0098
LRR [sensitive, ls]	1236	1262	0.8
LRR [sensitive, ls]	1236	1262	17
LRR [sensitive, ls]	1290	1313	1
LRR [sensitive, ls]	1290	1313	21
LRR [sensitive, ls]	1314	1337	0.019
LRR [sensitive, ls]	1314	1337	0.4
LRR [sensitive, ls]	1338	1361	0.00049
LRR [sensitive, ls]	1338	1361	0.01
LRR [sensitive, ls]	1362	1395	2.4
LRR [sensitive, ls]	1362	1395	49

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	519	1126	2e-57
CLV2 [A. thaliana]	522	1241	3e-45
FLS2 [A.thaliana]	539	1399	5e-85
Cf-9 [L. pimpinellifolium]	561	1416	2e-61
Xa21 [O. sativa]	581	982	5e-26
CLV2 [A. thaliana]	587	1052	1e-27
FLS2 [A.thaliana]	592	1031	8e-36
Xa21 [O. sativa]	682	1253	8e-42
Xa21 [O. sativa]	710	1354	8e-48
CLV2 [A. thaliana]	740	1440	4e-46
Xa21 [O. sativa]	758	1399	9e-60
CLV2 [A. thaliana]	802	1378	1e-42

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	1422	1441	out -> in

Report for 4274.m00155

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)