Report for 4277.m00168

 > 4277.m00168, length: 1185, copies: 2 

MSLSKTIGFISGINECFNFFQWAKSAMSCVHSRWSNTQDQKLQGELLQLQSSLQCLRDTLPAKYDLIDRAEWRSH

ERRVAELLPNLKDAMYNADDLLDEFRWYEQKVALEGNASQSPFMDFFDSVIQGSFNKVNDVIKRLYNISSQLEKM

GLHEVPRRFDNSLRPETSSFLNEREIFGRDNELQQVMELLGVPKNGTDARSKRRRKNNDESTSTSRCNQESIPVL

PIVGIGGVGKTTMAQHILHDPRVISHFDMIIWICVSDDFDVKRLTKEAIQSSSKKESTTFDGKRITKEAIQSYSK

KESTADHLDSLQHALSEKVRDKTLLIILDDMWDDALRESGRCWKRFCAPFSNVLAQGSIMLVTTRSLEVAHEVKT

MEPVRLEGLKDDIFWNFFKICTFGSSDSSDYPELERIGRNIVPKLKGSPLAAKTLGRLLRTSLDIAHWNNILQSE

LWELRQHNTEILPALRLSYLYLPFHLKRCFSFCALYPKDHLFEKAGLAEIWIAEGFVEPEGSIPILDIGCQYFEE

LVNRSFFQKVHGNYVIHDLLHDMAQLVSKHECFILKDKDDFEKVPSSVRHLFILPSTNFDCNLLLSLCKHKKLRT

LLCHRSLQDKTLACVMDRWCTELQHMRVIVCPYTKELPASIGKLKHLRYLKISGDCPFKSLPQEFCHLYNLQIFS

ATKCRLENLPSDFNKLRNLRRFDSCAFRCDPKFQTHFDAINGQEVGAILQYVNHICGGLTIDNIGLIRKDIAAKA

ALKNKKYVNTMTLKWSSMGQQVQKLTEVLQVLIPPTSLSYLNLTGCPGEFLPTWFHPSNLPMLTSLELIACHDFV

TIPTPSMSQSIDPNEIPKVLTENNKGRPGIFSSLNHVIIESCNKLSNLDQFLQPAYLPAIKTIKITKCRQLVELP

TDRLGEFHFLEELEVSHCPNLNDPQSLSIPTLKKLKLINSWNLLGDIECCSLTSLVFSLWHVTSIPLHVWSSSFP

ALQKLQIADSGITGESQSSVLTSLSVPGEYSSIRTFSCLTDLKISSCNNMTTLDHLLWPEHQPAVEKIYVALCSS

LRTLPCELLKDFSVLKDLKICFCPSLKWHRRLVLPSTLQRLSLTRCGDISPCVPSCLENLASLVSLEITFCSIVA

YIPASLWRGNLSSLRDLHIRGCEDLVSIGGAGAIAEINKVKIEGCLKLKEIEQPMSRARL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	159	512	2.8e-50
NB-ARC [Pfam fs]	224	512	3.3e-52
LRR [Pfam ls]	670	692	6.7
LRR [Pfam ls]	909	936	8.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	646	669	1.1
LRR [sensitive, ls]	646	669	23
LRR [sensitive, ls]	670	692	0.32
LRR [sensitive, ls]	670	692	6.7
LRR [sensitive, ls]	909	936	0.4
LRR [sensitive, ls]	909	936	8.4
LRR [sensitive, ls]	976	1000	1.7
LRR [sensitive, ls]	976	1000	35
LRR [sensitive, ls]	1013	1037	4
LRR [sensitive, ls]	1013	1037	83
LRR [sensitive, ls]	1039	1063	5.4
LRR [sensitive, ls]	1039	1063	110
LRR [sensitive, ls]	1087	1111	1.1
LRR [sensitive, ls]	1087	1111	23
LRR [sensitive, ls]	1112	1136	0.87
LRR [sensitive, ls]	1112	1136	18
LRR [sensitive, ls]	1138	1166	4.9
LRR [sensitive, ls]	1138	1166	100

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	26	939	2e-26
RPM1 [A. thaliana]	42	695	7e-40
I2 [L. esculentum]	66	1176	1e-102
Mla1 [Hordeum vulgare].	86	679	3e-30
Pi-ta [Oryza sativa]	86	676	3e-20
Xa1 [Oryza sativa]	133	1177	2e-82
Pib [Oryza sativa].	173	695	3e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4277.m00168

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)