Report for 4277.m00174

 > 4277.m00174, length: 902, copies: 2 

MDFSKIVGAINGINEISTLCKMVKDIIKSCWSGIREQELQDKVMKLENDLERFRDILPAMYNLIDRAEWTIHKDH

VPELLLKLKDAVYDAEDLLDELKWHELKVAMEGSANKSPLIDFLDSVIQGSFNKVSGTYEKLNNVSSLLEKMGLH

EVTQHFDKSFRPETTSFPTETEMFGRDNELEQVMQSLGVPAKGSRVLSKRKKPSSAINASPSTSKTKQHNGTQMS

DESGITCIPVLPIYGIGGVGKTTLAQHICHDSRVMSHFDPIIWICVSDDFDVKRLTKEAIQSCSTKEADNLDYLQ

RALSEEVMNKRLLIILDDMWGDVLRESGHCWKRFCAPLTNALQGSMMLVTTRSPDVAREVQTMEPIRLEGLQDDV

FWDFFKLCAFGSKNSENYPELVHIGKSIVQKLKGVPLAAKTLGRLLRMSLDTEYWNRILKSELWELKQNNTEILP

ALRLSYLYLPTHLKRCFSFCAVYPKDHKFEEDNLAEIWIAEGFVQPEGNTLILDTGKQYFEDLVNRSFFQSVGVS

KDDCFILKDKDDFEKGVGLTLMKNVNQICGGVTINNLGATSKDIAAESAIKNKKNLDRLNLKWSSVRSQDHNDIE

VLQVLIPPTSLKCLTLYGYLGQSLPNWFYPHNLPSLKSLEFHDCHRLCSLPFYGISPPCINLNEVPEVPIENGMG

SIGVFSSLVDLKIVKCDYLSNLDKFIQPACIPAIKRITLQRLTYTKTKVLPLPIGKFDCLEELDVAGYQIFNASE

SLSMRTLKELKLCNSGDLPCFFEFPSLTNMFLVVLPVTSIPLRVWCSNLPALLRLKIYSCANLEFIGESVFTGNR

PQRDSCSTTTFASLISLEICGCEKLTSIDDLVTPEYLPAIEKIDVSSCVKLSSLPGWSNWRDGANRCMTVGELPA

LL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	156	499	6e-52
NB-ARC [Pfam fs]	235	499	3.2e-56

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	580	603	5.3
LRR [sensitive, ls]	580	603	110
LRR [sensitive, ls]	635	659	2.8
LRR [sensitive, ls]	635	659	58
LRR [sensitive, ls]	756	778	6.8
LRR [sensitive, ls]	756	778	140
LRR [sensitive, ls]	801	825	2.1
LRR [sensitive, ls]	801	825	44
LRR [sensitive, ls]	838	860	3.2
LRR [sensitive, ls]	838	860	67
LRR [sensitive, ls]	864	886	0.85
LRR [sensitive, ls]	864	886	18

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	76	666	1e-68
Xa1 [Oryza sativa]	135	534	6e-60
Mla1 [Hordeum vulgare].	226	780	4e-27
N [N. glutinosa]	227	694	1e-13
Pib [Oryza sativa].	233	651	5e-19
Pi-ta [Oryza sativa]	233	525	2e-20
RPM1 [A. thaliana]	235	639	1e-29
RPS2 [A. thaliana]	235	494	5e-20

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	34	57

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4277.m00174

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)