Report for 4279.m00144

 > 4279.m00144, length: 269, copies: 1 

MEHLSPQKLILPLGILLSSLVLLHAIAVPSIDEQAAALIAWKTTLQTQQPLQSWDSKAWPCNNWRGIRCGTLQGQ

RVITKITLHGVRLRGSLEALNFSALTTLTSINLSHNRLTGMIPQSIMSLKELRALILHKNQIRGSLFQLGLTSLT

KLRFLVLSNNFLSSSIPKEICSLKRLVSLNLSSNQLGGHIPSEIGFLSKLIRLDLSNNNIIGRLDSLFMTNKPGK

YNNKSSLSNLKVLALSSNQLTGPIPHELGDLVLRPELIPTGTSP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	102	125	0.01
LRR [Pfam ls]	151	174	0.054
LRR [Pfam ls]	175	198	0.12
LRR [Pfam ls]	199	222	1.7
LRR [Pfam ls]	234	257	0.32

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	102	125	0.00049
LRR [sensitive, ls]	102	125	0.01
LRR [sensitive, ls]	126	150	1.5
LRR [sensitive, ls]	126	150	31
LRR [sensitive, ls]	151	174	0.0026
LRR [sensitive, ls]	151	174	0.054
LRR [sensitive, ls]	175	198	0.0057
LRR [sensitive, ls]	175	198	0.12
LRR [sensitive, ls]	199	222	0.083
LRR [sensitive, ls]	199	222	1.7
LRR [sensitive, ls]	234	257	0.015
LRR [sensitive, ls]	234	257	0.32

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	1	265	2e-19
CLV2 [A. thaliana]	28	256	7e-15
Xa21 [O. sativa]	37	250	1e-20
Cf-9 [L. pimpinellifolium]	45	262	7e-12
Xa21 [O. sativa]	56	256	1e-17
Cf-9 [L. pimpinellifolium]	62	262	6e-11
FLS2 [A.thaliana]	67	255	7e-16
FLS2 [A.thaliana]	78	256	4e-17
Xa21 [O. sativa]	78	258	3e-14
FLS2 [A.thaliana]	88	262	1e-15
CLV2 [A. thaliana]	95	250	9e-16
Cf-9 [L. pimpinellifolium]	96	256	1e-12
CLV2 [A. thaliana]	96	256	2e-11
CLV2 [A. thaliana]	100	252	2e-13
FLS2 [A.thaliana]	100	256	1e-13
FLS2 [A.thaliana]	100	257	2e-13
FLS2 [A.thaliana]	100	214	1e-10
FLS2 [A.thaliana]	101	256	2e-15
FLS2 [A.thaliana]	101	258	4e-14
CLV2 [A. thaliana]	103	256	9e-13
FLS2 [A.thaliana]	103	253	3e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	9	31	in -> out

Report for 4279.m00144

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)