Report for 4336.m00201

 > 4336.m00201, length: 1798, copies: 1 

MPQSEENSCKLFFRRVFSSEDCPKHLTEAASVILKKCGGLPLAIISIAGLLSNKNPTVEVWTKIKNSISSMVEKD

SPVDKMKRILFLSYFDLPQYLKTCLLYLSVFPEDSNIDPRRLIRLWVAEGLILGQSRACTEQSGESYLHELINRS

MIQPSKIGADGRVKICRIHDVILDFIVSQAEEENFVTILNNSDPSDYTSNKFRRLSLQSGFSEGSKMPKASKDLS

HLRSLHMFKHESLPVVPSEFAKCQVLRVLAIKLRLGDNYIKHVGHFCELKYLRIKGGIHKLPEEIGKLQHLQTLD

LAYTRIEKLPASIVQLQKLVHLLIPFGVPLPDEIGNLQALEVLSGIDLDRASVKSIYGLGELSKLRDVRIWWSDS

NEDNSKEGHRTACISSLSKLVKCSLQSLRLARGLSNPDVIASLMISCGFIPPLRRLVFYDEFPTIPSQFASLVNL

TRLRVEVGGVGGLEILASLPILQSLTLDTNSDVSNLRWVISGQGFQNLRKFNFEIRDSVVGLMFEPGAMPKLQRL

KLWLYARWQLDVHGGPVVGLHHLSALKSIALVFNCNGAVAAEVESSEDDARAAAVSHPNCPTLDIQSMRFLCTLS

KSSLHWATATNPCIPCLSRRQLQVEAMEKQNIDFGKVLGEIQESLVSLHRAQGDTQAAIIKLDQGVSAWRPQVEA

AVQDLHEEVGDLRQQVDLLNKVKQAPPAASSPRVPLTGEERKAPLLPTPTATSPAAVAEGAEKWANGHRLHQNFR

GKASGVVTTLIHSLGKGLWVWVSTIYFMGRAASWLRSSRAHVRFPVWEDFCVAVANKFDRDQHDELIRQMDTIRQ

IGTVWEFYEKFDELMNHLLAYDPAGLGHYLNPQVEQLGVIALKTVWVLSPIARLLLRQTRFQLSRYNGVHKDFVI

SVLKNGLLLINALLQCNCMQFKSFSVFYKRLILLSKMSHSVGRCLRNVQRKPQQISVQVANGNILHCTSAITDCQ

WSTQGCKLSKPWLILFSYVSHIANQNRSLFRTVYSRFSLGISSKLRKLNAHLHSRLSYLGHVISPNGVATNEEKI

QAVQMWPTPTSVKELRSFLGLVGYYWKFVRHFGILTLKQVLISAPVLAMPNFALPFTVETDASDKGIRAVLLQND

HPIAFLSRALGPHHQGLSTYEKESLAIMLAVEHWRPYLQHAEFCIRTDHRSLSFLSDQRLSTPWQQKAVTKLLGL

CYRIVYKKGTENGTADALSHVSDSSLVTLSALSVCIPEWMQEIIDGYQLVPDACSNVQALCINNAALPQFTLKNG

ILYFQDRIWIGQNSSVQQKILANLHTAAIGGHSGIQVTYQRIKQLFAWPGLRADVVRFVQSCDICQRAKSEHVRY

PGFLQPLPVPDQYWQVVSLDFIEGLPRSASFNCILVVVDKFSKYAHFVALAHPFTALEVAESYVQNIHRLHGLPQ

VIISDRDRIFTSTLWTTLFRLEGSQLKMSYHLQTDGQTERVNQCLETFLRCFVHACPSKCSRWLALAEYWYNTSF

HSSLGTTPFEVLYGHKPRYFGLTAAAACPTSDLATWLTERDHMLSLIREHLQRAQLRMKSQADAKRSEREFAKAL

APTEKVQSHLPVFLADQDTSPTPLRILDRRFIRKGAKMVEFVQVAWSGPDVQTSDEASSAHQDGLRKSRRERRPN

PAYHGTAFPSWTLTFLELVPLSFHQPLAAQQGSSEPVLPKDLVETGNEELLALCHKANIHVEILCDKTLIIQPYA

DAPVKNVNHLPVQGIVVNISIVVALVPLDCIFQKDIDGDVSIKSKKAWDQGLSLQQKRSQDQNPTNPDNRYTR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	4	132	6.3e-28

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
Retrotransposon gag protein [fs]	771	840	2.8e-08
Integrase core domain [fs]	1359	1513	1.2e-24
Integrase core domain [ls]	1359	1513	1.5e-23

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	2	591	1e-69
Pi-ta [Oryza sativa]	2	365	5e-41
I2 [L. esculentum]	4	345	3e-21
RPM1 [A. thaliana]	5	525	4e-37
Pib [Oryza sativa].	10	527	4e-44
RPS2 [A. thaliana]	16	365	7e-18
Xa1 [Oryza sativa]	33	407	6e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Integrase core domain	1359	1513	1.3e-23

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	672	696

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4336.m00201

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)