Report for 4390.m00175

 > 4390.m00175, length: 909, copies: 1 

MEFVASIVDAVFRPLKDYFARTFGYVMSCGDYIDLLGHEMDELKSKRDDVKRLVDVAERRGMEATSQVKWWLECV

SRLEDAAARIEEEYQARLRLPPEQAPGLRATYHLSQRADEMFAEAANLKEKGAFHKVADELVQVRFEEMPSAAVV

GMDAVLQRLHACVRHGDVGIVGIYGMAGVGKTALLNKYNNDFLINSPDINVAINIEVGKEFSLDDIQKIIGDRLG

VSWENRTPRERAGMLYRVLTKMNFVLLLDDLWEPLNFQMIGIPVPKHNSKSKIVLTTRIEDVCDRMDVRRKLKME

CLPWEPAWELFREKVGEHLMFSSIEIQEQAKALAMKCGGLPLALITVGRAMASKRTEKEWKHAITVLKVAPWQLL

GMEMDVLMPLKNSYDSLPSDKLRLCLLYCSLFPEEFSISKEWIIGYCIGEGFIDDLYTDMDEIYNKGHDLLGVLK

IACLLEKGDDEDHISMHPMVRAMALWIASDFGTKETKWLVRAGVGLKEAPGAEKWSDAERISFMRNNILELYERP

NCPLLKTLMLQVNPALDKICDGFFQFMPSLRVLDLSHTSIHELPSGISSLVELQYLDLYNTNIKSLPRELGALVT

LRFLLLSHMPLDLIPGGVISSLTMLQVLYMDLSYGDWKVDATGNGVEFLELESLRRLKILDITIQSLEALERLSL

SNRLASSTRNLLIKTCASLTKVELPSSRLWKNMTGLKRVWIASCNNLAEVIIDGNTETDHMYRQPDVISQSRGDH

YSNDEQPILPNLQNIILQALHKVKIIYKSGCVQNITSLYIWYCHGLEELITLSDDEQGTAANSSEQAARICRDIT

PFPNLKELYLHGLANCRALCSTTCFLRFPLLGNLKIVDCPKLKKLELPVGNLNAVQCTREWWDALEWDDAEVKAS

YDPLFRPLH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	133	433	1.2e-62
NB-ARC [Pfam fs]	152	428	3.8e-63
LRR [Pfam ls]	554	576	0.022
LRR [Pfam ls]	577	599	0.021
LRR [Pfam ls]	600	623	4.6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	529	553	5.2
LRR [sensitive, ls]	529	553	100
LRR [sensitive, ls]	554	576	0.0011
LRR [sensitive, ls]	554	576	0.022
LRR [sensitive, ls]	577	599	0.0011
LRR [sensitive, ls]	577	599	0.021
LRR [sensitive, ls]	600	623	0.24
LRR [sensitive, ls]	600	623	4.6

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	1	907	1e-135
Xa1 [Oryza sativa]	144	668	3e-26
Pib [Oryza sativa].	149	427	1e-16
Pi-ta [Oryza sativa]	149	446	1e-13
I2 [L. esculentum]	170	874	4e-27
RPM1 [A. thaliana]	170	797	1e-21
Mla1 [Hordeum vulgare].	171	673	3e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	38	60

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4390.m00175

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)