Report for 4417.m00120

 > 4417.m00120, length: 659, copies: 1 

MDGAAVSVATGVMGSLLAKLSALLGEERGLLKGVKGDIRFLRDELSTMNVFLMNMASVEENMDVQVKDWRNKVRE

LSYDIEDCIDLFMHKLNRGDDKVNIVLKMAKKIRMLWSRHQIANQIQELKARVKEESDRRLRYYFSECNAHVDGT

KIDPRLPALYVEEEKLVGIHGPMEEIIELLMKEDGSGQKLKVVSIVGFGGLGKTTLANQVYNKIKDQFDCSAFIS

VSQSPNIKKILFDMLKDVTSRDNSDDDKQIKVVGVKGDKSDDERQLIGKLRVFLENKRYFIIVDDIWSASAWEHV

RLALPENSLCSRIITTTRNVNVAKSCCSGFQGSVYNIQPLNEQDSKKLFLKRLFHSDSNFPTHLEEVSHAIIKKC

HGFPLAIICLASLLASKSDTKDQWEQVHNSLSSAFSSQGMSDILLLSYYDLPYHLKTCLLYLSVFPEDYKIDRDE

LIWRWIAEGFITEVKGQTLDQVGGSYFNELINRNMIQPIDIKYDGTANACRVHDMVLNLIISISSEENFLTVVDE

QGYKYLGNKIRRLSFQSNSVENDVNVVQKIMDNLSQLPDQFGNLHYLQTLDIRGSGIEKFPPTVVRLHNLARLLV

GNKVQLPDGIGDLQSLQVLSSARLYKPLKLVEDLRRLTKLRTLEIVLHGSDTLGAHEMG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	151	466	9.4e-68
NB-ARC [Pfam ls]	151	466	2.6e-68

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	3	647	9e-51
Pi-ta [Oryza sativa]	5	621	2e-75
Mla1 [Hordeum vulgare].	6	659	1e-112
RPM1 [A. thaliana]	17	643	6e-66
Pib [Oryza sativa].	48	368	5e-15
Pib [Oryza sativa].	50	652	3e-62
Xa1 [Oryza sativa]	112	544	4e-30
L6 [L. usitatissimum]	159	440	4e-14
M [L. usitatissimum]	161	440	3e-15
RPS2 [A. thaliana]	164	623	5e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4417.m00120

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)