Report for 4434.m00117

 > 4434.m00117, length: 802, copies: 1 

MTVLSVLASSILSKVTTFAVEYALDDIKFAWNVKSELEKLKNSLGAICAVLKDAERKQSTHSSLKHWLENLKDVV

YDIDDVLDDVGTRVLQQKVRKGEICTYFAQLTIFPFELGRKIRKVRERLNEIAALKRDFELKEEPIDTPSDQFAQ

RETHSLIGEQNIFGRDKAKNDIVKMISEAAESNSNTLSVLPLIGMGGVGKTALAKLVFNDKSTKDKFDKMLWASV

SNAFDLKHIVNIIIQSDSGESNNQLTLEALTKKLHELLRDKRYLLVLDDISNDNVNWEELINLLPSGRSGCMILI

TTRLTKIASELKTLEPYEVPKLPHEECRKIFVRYAFRGEKAKDRELLKIGESIVQKCDGLPLAARTLGSLLFRKD

ISMWQEVKENNLLSTGKGKDDILSVLKLSYDALPSDLKTCFSWLSTFPKDYDIFRELIIMYWMAMGLLNPASRTK

EAIRVGEKYFNELAGRSLFQDYVFNHDGSISHCKMHSLVHDLAISVSQNEHAIVGCENFTATERVKNLVWDHKDF

TTELKFPTQLRRARKARTFACRHNYGTVSKSFLEDLLATFTLLRVLVFSEVEFEELPSSIGNLKHLRYLDLQWNM

KIKFLPNSLCKLVNLQTLQLAWCKELEELPKDVKRLVSLRYLILTSKQQYLPKDALGGWTSMVFLQISACPMLTS

LTEGFGSLSALRELFVFNCPKLPSLPSSMNRLVTLQKLVIHNCDELDLMESEEAMGGLNSLESIELAGLPKFKTF

PDSFASASSSLQYLKVSDCPQFEELPDFIKRFSSLKKIEIPKSRAPSTITWA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	146	448	1.1e-66
NB-ARC [Pfam ls]	146	448	3.3e-67
LRR [Pfam ls]	590	613	0.98
LRR [Pfam ls]	614	637	5
LRR [Pfam ls]	760	783	4.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	567	589	1.3
LRR [sensitive, ls]	567	589	28
LRR [sensitive, ls]	590	613	0.043
LRR [sensitive, ls]	590	613	0.98
LRR [sensitive, ls]	614	637	0.22
LRR [sensitive, ls]	614	637	5
LRR [sensitive, ls]	661	684	0.88
LRR [sensitive, ls]	661	684	20
LRR [sensitive, ls]	685	705	2.1
LRR [sensitive, ls]	685	705	47
LRR [sensitive, ls]	735	758	1
LRR [sensitive, ls]	735	758	23
LRR [sensitive, ls]	760	783	0.19
LRR [sensitive, ls]	760	783	4.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	789	6e-47
RPM1 [A. thaliana]	33	764	3e-56
I2 [L. esculentum]	37	649	6e-77
RPS2 [A. thaliana]	47	790	1e-34
Pi-ta [Oryza sativa]	67	739	2e-30
Xa1 [Oryza sativa]	86	731	2e-55
L6 [L. usitatissimum]	114	422	2e-15
M [L. usitatissimum]	117	422	2e-21
N [N. glutinosa]	117	799	9e-26
Pib [Oryza sativa].	159	794	1e-46
RPP5 [A. thaliana]	568	785	8e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4434.m00117

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)