Report for 4435.m00207

 > 4435.m00207, length: 279, copies: 1 

MADGAKLLLWLLLLSSSPWCFCSELDVQCLETLYRSVIDSNGILQSSWTFVDNGTDGYICKFTGVECWHPDENRV

LSLRLGNLGLQGPFPQGLQSCTSMIGLDLSSNIFSGPIPADIATQVPCLTSLDLSYNSFSGPIPASISNMTYLNT

LNLQHNQFSGEIPRQFDSIGRLISFNVADNLLSGPIPSSLQKFSASNFAENQGLCGAPLDNCPRRRRWRLRLHRI

NDESSIGAAVGFVVGFVVAFYFPHWFVFSKRLHPYIFQIWSIPSGNLSANLRRT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	123	146	0.014
LRR [Pfam ls]	147	170	7.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	74	97	7.3
LRR [sensitive, ls]	74	97	140
LRR [sensitive, ls]	98	122	4.7
LRR [sensitive, ls]	98	122	92
LRR [sensitive, ls]	123	146	0.00069
LRR [sensitive, ls]	123	146	0.014
LRR [sensitive, ls]	147	170	0.38
LRR [sensitive, ls]	147	170	7.5
LRR [sensitive, ls]	171	194	0.6
LRR [sensitive, ls]	171	194	12

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	24	190	1e-11
Xa21 [O. sativa]	26	198	1e-16
CLV2 [A. thaliana]	74	190	4e-14
FLS2 [A.thaliana]	75	217	9e-19
FLS2 [A.thaliana]	75	197	8e-12
FLS2 [A.thaliana]	77	190	9e-11
FLS2 [A.thaliana]	78	190	3e-15
FLS2 [A.thaliana]	78	191	1e-11
FLS2 [A.thaliana]	78	197	9e-11
Cf-9 [L. pimpinellifolium]	102	209	3e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	231	253	out -> in

Report for 4435.m00207

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)