Report for 4439.m00119

 > 4439.m00119, length: 849, copies: 2 

METAMAATCSALSSLGDIMLVVREEEEETREGGAVELLAAELTAVHAALRDDYLADVPPARFDEQAKAWSGHARE

LACDAALLARRADGSPDAASAATVKALLERAADLSRRRPRPTAAVDPRRPAAAVDAGPPATEIVGLDAAKDDLIK

KLCDDVDGDEQSEQRLKTVSIVGAAGLGKTTLAKMVYDTLRPRFDCGAFVSVSAINPDMAMVFMRMLRQLDDDDK

HESVGGEEPSVSGEAQLVDQLSKFLRDRRYVQYLIVIDDLWDKPSWEMIKHALVENYCGSRIITTTRNFSVADQA

GMPYELKPLSAENSKILFLQRIFGHDNKICLDDEFAEVADKILKKCDGVPIAILALASLLAGKIGDKKEWYKVHN

SIGSTLENGADVKNMRMTISVGYYRLPANLRACLLYLSIFPEDYEVSSLSSEENFVTILNDEQQTCSSNKGCRLS

IRGSKASVDTTNQATMMSMLQARSLSVFSPAIGSINLSEFKVLRVLDLEGCDISQSHHVLNDHLGSLIHLRYLGL

RNTRITELTEDVGKLQFLQTLDLADTRVKELPATVFRLGKLMCLRVEFQTRIPSGIGNLVSLEELSDISTRDSPD

LVNELRNLTKLRVLKITLRQPTQSTEEALVESLRNLRKLQDLHIYAASGNGHKRLLDLLQDGSWTPPPRLRSFSA

LATYISCSPLRLLPAWIAASVVPRLAVLLIQVRELRQVDIDALGKLPVLRTLRVEPYEMKEMIVIGRDAFPCLKE

CRFRNSDHGPVIQRGAMPRLRIIEFCFGVRQTKDLGNGFDFGLANLGCLEEATVYINCKEATEPEAEEAEGAVKH

AADTHPNHANFDMNIWGRAHAFRR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	119	436	2.4e-39
NB-ARC [Pfam ls]	119	436	1.3e-38
LRR [Pfam ls]	519	541	2
LRR [Pfam ls]	542	565	8.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	492	518	0.69
LRR [sensitive, ls]	492	518	14
LRR [sensitive, ls]	519	541	0.1
LRR [sensitive, ls]	519	541	2
LRR [sensitive, ls]	542	565	0.41
LRR [sensitive, ls]	542	565	8.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	833	4e-97
Pi-ta [Oryza sativa]	49	840	2e-36
I2 [L. esculentum]	98	614	2e-28
RPS2 [A. thaliana]	134	644	9e-16
RPM1 [A. thaliana]	138	620	3e-31
Pib [Oryza sativa].	164	575	5e-36

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4439.m00119

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)