Report for 4440.m00144

 > 4440.m00144, length: 888, copies: 1 

MAVGLPIVFGCHDYSGFTNIDCGFVDGESYTDSTTNLTYVPDHEFVEGGTHHEVVPKLISGSTDEQEKTLRSFPD

GQRNCYTIPSTSGKKYLIRTTFTYGNYDGLRSSENGSLFLFGLHIGVNFWTTVNLTKQDSSDTIWKEVLTVAPDE

FIYVCLVNFGSGTPFISALELRQLDDPMYPFLNLFVSVSYFTRMRFGAVDDFITRYPTDLFDRFWEAAQCYSYPW

LNLTTNQTVNKLPGNDNFQVPTLIVQKASTINSGFSWLNISITAGDNLNGQSLELLPIFHFAEIEKNRPNRTFQI

YSDGNELHQAFSPSYLQVDSVYLRDRYLHESGTTFTLCKTNSSELPPLINAFEAYSLVRMENLTTDTIDVSSMKQ

VKTQYNVQRRSWNGDPCSPKEYTWEGVKCNYYDGKQNPRIILVNLSASRLSGWINPSFRNMSLEILDLSHNNLSG

TIPYNQVNSLKSLNLSYNQLIGSVPDYLFKRYKAGLLELRLEGNPMCSNISESYCAMQADKAKKNTATLLIAVIV

PVVAITLMLFLWMLCCKGKPKEHDDYDMYEEENPLHSDTRRFTYTELRTITNNFQSIIGNGGFGTVYHGILGNGE

EVAVKVLRETSRALSKDFLPEVQTLSKVHHKNLVTFLGYCLNKKCLALVYDFMSRGNLQEVLRGGLEYLHESCTP

AIVHRDVKTANILLDENLVAMISDFGLSRSYTPAHTHISTIAAGTVGYLDPEYHATFQLTVKADVYSFGIVLLEI

ITGQPSVLVDPEPVHLPNWVRQKIARGSIHDAVDSRLMHQYDATSVQSVIDLAMNCVGNVSIDRPSMTEIVIKLK

ECLLAGTGKKQLVSGSYKQKDAMDAGIARQFQLLISGVPIDGDGCACATHREEMINHCNGKMK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	437	458	0.48
LRR [Pfam ls]	459	483	0.15
Ser/Thr pkinase [Pfam fs]	577	663	1.9e-15
Ser/Thr pkinase [Pfam ls]	577	822	3.8e-31
Ser/Thr pkinase [Pfam fs]	665	756	8.2e-23

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	437	458	0.024
LRR [sensitive, ls]	437	458	0.48
LRR [sensitive, ls]	459	483	0.0075
LRR [sensitive, ls]	459	483	0.15
LRR [sensitive, ls]	485	508	4.9
LRR [sensitive, ls]	485	508	97

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	415	824	3e-47
Xa21 [O. sativa]	438	662	2e-21
Pto [L. esculentum]	563	828	9e-45
Rpg1 [Hordeum vulgare]	564	824	2e-33
Rpg1 [Hordeum vulgare]	567	831	1e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	517	539	out -> in

Report for 4440.m00144

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)