Report for 4451.m00196

 > 4451.m00196, length: 823, copies: 1 

MAETAILLAIKKISIAVAGEMLSLSRPIIAKKSELVVALPTNMELVKDELEIINAFLKKVKTRDCRDNVLETWIT

QVRRLAYDIEDIVDQFIYVVGEHQGKGFWGNLKKFVKKPESLFSLDRVATEVEKVKLKLKELSSRRDRWVQSTIC

RPDAEIPNYDDEQGVYQFRHSQVPDYDDNELVGVDEYRETLTKLLYSEHCSLRIVAVCGMGGLGKSCLVYNVFKR

ERSHFDCSSWISVSQSCKMDDIFRNMLNQLLGDSSEVNYDTSRMGIEVLKEELKRFLEDKSYIIALDDIWRAPVL

LEIRDTLFNSGKGSRLIITTRIDEVAAIAEDACKINLEPLSKYDAWILFCRKVFWKTENHACSPELQKWGEKIVN

KCEGLPLAIVALGSLLSLRDKTEAVWKCFHSQIIWELQNNPDISHVEWILNLSYRHLPNHLQNCFLYCAMFPEDH

LLRRKKLIRLWIAEGFVEQRGSISLEEVAESYLIELVHRSMLQVVERNSFGRIRRFRMHDLVRELAIKMSEKESF

SSLHDDTSGVVQVVSDSRRVSLIRCKSEITSNLASSRLHTFLVFDTTMLQCSWSCFVPPKSKYLAVLDLSGLPIE

AISNSIGELFNLKYLCLNDTNLKSLPKTITRLHNLGTLSLERTQVTSFPEGFAKLKKLRHVLVWKLLYNEHSSFS

NSLGMGTIEGLWNLKELLTLDEIRANKKFVSRLGLSLCWCDLTEDPIPYLSKLSNLTSLNLRRTPVQGSHMLAKL

VRWWSIALFPKLKGMTLQDMVEVREIYMDEGTLISLEYLKLDGLKQLAHVPDGIEFLILKGGEIYKKVLEWED

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	166	472	7.8e-69
NB-ARC [Pfam ls]	166	472	2.1e-69
LRR [Pfam ls]	611	633	1.8
LRR [Pfam ls]	634	656	0.94

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	588	610	0.93
LRR [sensitive, ls]	588	610	25
LRR [sensitive, ls]	611	633	0.068
LRR [sensitive, ls]	611	633	1.8
LRR [sensitive, ls]	634	656	0.035
LRR [sensitive, ls]	634	656	0.94
LRR [sensitive, ls]	730	751	1.2
LRR [sensitive, ls]	730	751	32
LRR [sensitive, ls]	785	808	2.2
LRR [sensitive, ls]	785	808	58

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	28	808	3e-99
Mla1 [Hordeum vulgare].	28	640	2e-59
I2 [L. esculentum]	43	794	9e-51
Pib [Oryza sativa].	52	328	7e-13
Pi-ta [Oryza sativa]	67	641	3e-44
L6 [L. usitatissimum]	177	523	1e-14
M [L. usitatissimum]	177	523	7e-14
Pib [Oryza sativa].	177	661	2e-52
N [N. glutinosa]	181	515	5e-14
RPS2 [A. thaliana]	181	790	1e-33
Xa1 [Oryza sativa]	189	688	8e-38

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4451.m00196

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)