Report for 4455.m00122

 > 4455.m00122, length: 640, copies: 1 

MDHLSIRNPLSLLLSLQLSLLLFNPLSVADLTSEKQALLDFASAVYRGNRLNWSQSTSLCSWHGVKCSGDQSHIF

ELRVPGAGLIGAIPPNTLGKLDSLQVLSLRSNRLAGSLPSDVTTLPSLRSIYLQHNNFSGDLPSFLNPNLSVVDL

SYNSFTGEIPISLQNLSQLSVLNLQENSLSGSIPDLKLPSLRLLNLSNNDLKGQIPQSLQTFPNGSFLGNPGLCG

PPLAKCLLPDSPTPSPASPSSAPTPMSAHHEKKFGAGFIIAVAVGGFAVLMFVVVVLVVCNSKRKGKKESGVDYK

GKGTGVRSEKPKQEFSSGVQIAEKNKLVFLEGCSYTFDLEDLLRASAEVLGKGSYGTAYKAILEDGTVVVVKRLK

DVVAGKKEFEQQMELIGRLGKHANLVPLRAYYYSKDEKLIVYDYLTNGSFSTKLHGIRGVTEKTPLDWSTRVKII

LGTAYGIAHVHAEGGAKLTHGNIKSTNILLDQDYSSYVSDYGLTALMSVPANASRVVVGYRAPETIENRKITQKS

DVYSFGVLLMEMLTGKAPLQSQGNDDVVDLPRWVHSVVREEWTAEVFDVELIKQQNIEEELVQMLQIAMACTSRS

PDRRPSMEDVIRMIEGLRHSASESRASSDEKMKDSNPPSV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	98	121	0.25
LRR [Pfam ls]	122	142	1.3
LRR [Pfam ls]	144	167	0.045
LRR [Pfam ls]	168	189	1.7
LRR [Pfam ls]	190	213	0.0065
Ser/Thr pkinase [Pfam fs]	344	555	1.3e-33
Ser/Thr pkinase [Pfam ls]	344	616	4.2e-32

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	98	121	0.012
LRR [sensitive, ls]	98	121	0.25
LRR [sensitive, ls]	122	142	0.062
LRR [sensitive, ls]	122	142	1.3
LRR [sensitive, ls]	144	167	0.0022
LRR [sensitive, ls]	144	167	0.045
LRR [sensitive, ls]	168	189	0.082
LRR [sensitive, ls]	168	189	1.7
LRR [sensitive, ls]	190	213	0.00031
LRR [sensitive, ls]	190	213	0.0065

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	2	211	1e-12
Xa21 [O. sativa]	9	218	3e-19
FLS2 [A.thaliana]	14	214	3e-15
FLS2 [A.thaliana]	26	630	2e-55
CLV2 [A. thaliana]	34	218	1e-18
Cf-9 [L. pimpinellifolium]	51	207	4e-11
Xa21 [O. sativa]	54	213	6e-16
Xa21 [O. sativa]	60	214	2e-15
Cf-9 [L. pimpinellifolium]	63	269	1e-15
Cf-9 [L. pimpinellifolium]	64	207	2e-17
FLS2 [A.thaliana]	66	209	3e-15
FLS2 [A.thaliana]	72	211	2e-14
Cf-9 [L. pimpinellifolium]	74	209	2e-11
CLV2 [A. thaliana]	77	212	5e-14
CLV2 [A. thaliana]	77	209	1e-12
FLS2 [A.thaliana]	84	209	1e-12
Xa21 [O. sativa]	86	430	2e-19
FLS2 [A.thaliana]	90	209	5e-16
FLS2 [A.thaliana]	90	207	5e-13
Pto [L. esculentum]	334	615	2e-34
Rpg1 [Hordeum vulgare]	345	615	1e-18
Rpg1 [Hordeum vulgare]	349	617	1e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	261	283	out -> in

Report for 4455.m00122

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)