Report for 4489.m00164

 > 4489.m00164, length: 969, copies: 1 

MEAALLSGFIKAILPRLFSLVNDKLNLHKGVKGDIDFLIKELRMIVGAIDDDLSVEHGAAAAAAAVQTLCMEDLR

ELAHGIEDCIDGVLYRAAREQRRSSSLLPRTVRATKKLLQTNQHLAQELQRLKRMVEEANQRKQRYTAAAPGQHG

QVYSSAAAQVDEPWPSCSSASDPRIHEADLVGVDADRAELLEQLAERQPEQLKVIAIVGFCGLGKTALAAEAYNR

ETRGGRFERHAYFIVIDDIQTEDQWKSIKSAFPTDKDIGSRIVVTTTIQSVANACCSANGYLHKMSRLDKNCSKQ

LLSKKACPERYSHYKQPDSAAILKKCDGQPLALVTIGEFLQANGWPTGPNCEDLCNRLHYHLENDKTLERMRRVL

VRNYTSLPGHALKACLLYFGMFPSDHPIRRKSLLRRWLAEGFVEPVSSSSNLDSTAAFDVLMDRNIIEPINVSNN

DKVKTCQTYGMMREFISHMSISQNFVTFFCDDKFLPKYVRRLSLHGDTVVNGDNFNGIDLSLVRSLVVFGEAGTT

VLDFSKYQLLRVLDLEKCDDLNDDHLKEICNLVLLKYLSLGGNISKLPKDIAKLKDLEALDVRRSKVKIMPVEVF

GLPCLIHLLGKFKLSDKVKQKTEVQEFLSKGKSNLQTLAGFASNGSEGFLHLMRYMNKLRKLKIWCTSSAGSTDW

TDLREAIQQFILDEKEANIGTRSLSLHFTGCSEDAINSLKEPCYLSSLKLHGNFPQLPQFVTSLRGLKELCLSST

KFTTGLLEALSNLSYLQYLKLVADELEKFIIKVQGFPRLLCLCIVLQCPTFPVIEEGALPFLVTLQLLCKDLHGL

SDIKIECFKHLQEVTLHSGVTPATRQEWVKAAKEHPNRPKVLLLKSVDTAESEHTDVDSVMEAVKSETTEYSIAP

EGPEQVIDMNNKMQLDHGLESSSVLNKQNNFADQSSSKDQLHYSFNNMGLSDVSPAVSELPNGMVPSCT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	164	238	1.8e-09
NB-ARC [Pfam ls]	164	423	5.7e-13
NB-ARC [Pfam fs]	239	423	1.2e-17

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	534	558	2.7
LRR [sensitive, ls]	534	558	30
LRR [sensitive, ls]	559	580	0.83
LRR [sensitive, ls]	559	580	9
LRR [sensitive, ls]	581	603	5.4
LRR [sensitive, ls]	581	603	60
LRR [sensitive, ls]	741	764	0.75
LRR [sensitive, ls]	741	764	8.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	4	610	6e-19
Mla1 [Hordeum vulgare].	5	881	4e-60
RPM1 [A. thaliana]	16	841	5e-45
Pi-ta [Oryza sativa]	31	608	2e-42
Pib [Oryza sativa].	233	608	3e-43

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	113	145

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4489.m00164

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)