Report for 4489.m00166

 > 4489.m00166, length: 1021, copies: 2 

MAEAALLALSKIGSYAAIEAAMVAKSKISNLMELSATVQRIRRQFLMMNFFIRKMGASYLSDELLKGWIAEVRML

AYRVEDVLDSFFYHSIQFKKDKFLNKIVKGSHYAVVFNAIADELVQIEKDIEHVSKLKDMWVYPVSQLIPTQVTI

SEHRFPQYSFPRLMKDEDLVGMENNRQHLKQLFSHGISALRVISVWGMGGMGKTTLVLNVYEQHKEKFDINVWLT

VSQAFSVEALLRKLLWEIRRRCELTTPGDGDSVNKEQQASDETDKLEVSQLKELKDELKKALMRKRFMVVLDDVW

DRQVFDMMHDVFEDFRNGSRVVITTRRGDVAALAHEGCQLKLNPLELNDALLLFSKKAFPNSNDLECPLKLKDLA

TDIAKKSNDSSLTECRLELNGLATDIAEKCNCLPLANSPAQVQELVAYIVKNCQDLLQMENNPSGLQKLATDILK

KCELLPLVKCSAELQKLAIEIVKKCGGLPLAIASVGSLLSARMQIECVWKQIHDQLPCELEKDDQVRGVLTLSYY

DLPGELRNCFLYCSMFPEDYLLSREVLVRQWIAEGFVEKKGDSTLEEVAEGYLMELVHRNMLQLVYNDELGRVST

CSMHDILRELALSISKAELFGTANNFSEMAQMNTNVRRLSACRWTHTEHDLSKIKFPHLRTVIALQSSMDFVPSI

LSESKHLTVLELQDSGINQVPASIGDLFNLRYIGLRNTAVKSLPDSIEKLVNLQTLDAKSTKIEKLPSGIVKLYK

LRHLLIDRLSDGTRTEFRYFEGVVAPKGLSRLEELQTLETVEASKDLGEHLEKMIQLRNLWIGNIKAGHCAQLLA

SLSKMPLLYSLLLCASDEEEKLNIEKLVPTSTMLQKLIIRGCTSESTLECPVFQDHGRRLKYLALSRCHLGHDAF

ERLEKCVPNLTYLSLNKVHTNGAHTLVLPAKSFPLLKTLVLRNMSNVNLLKIGADALKCIEGLYIVSLSNLKSVP

EGIESLSSLKKLTLLGLHNDFKAEWNKKRMHEKMKHVTKLRVYEWS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	153	567	7.8e-32
NB-ARC [Pfam fs]	190	382	7.9e-33
NB-ARC [Pfam fs]	459	567	2.9e-31
LRR [Pfam ls]	681	703	5.3
LRR [Pfam ls]	704	726	3.6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	681	703	0.48
LRR [sensitive, ls]	681	703	5.3
LRR [sensitive, ls]	704	726	0.33
LRR [sensitive, ls]	704	726	3.6
LRR [sensitive, ls]	727	750	0.74
LRR [sensitive, ls]	727	750	8.1
LRR [sensitive, ls]	884	907	3.1
LRR [sensitive, ls]	884	907	34

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	38	411	3e-24
Pib [Oryza sativa].	47	375	7e-13
I2 [L. esculentum]	61	411	1e-19
Mla1 [Hordeum vulgare].	66	407	6e-21
M [L. usitatissimum]	163	388	1e-11
Pib [Oryza sativa].	165	761	2e-40
Xa1 [Oryza sativa]	172	387	1e-10
RPM1 [A. thaliana]	457	1018	2e-74
Mla1 [Hordeum vulgare].	460	754	8e-34
RPS2 [A. thaliana]	461	992	9e-26
Xa1 [Oryza sativa]	461	1018	8e-22
I2 [L. esculentum]	463	810	2e-27
Pi-ta [Oryza sativa]	464	788	1e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4489.m00166

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)