Report for 4490.m00121

 > 4490.m00121, length: 774, copies: 1 

MAEAVLLSVKKVGNVLADEAANAVIAKVSEKVTNLKEMPEKVEEIRKQLTIMNSVILQIGTSYLTGIVVKNWIAE

VRKLAYHVEDVMDKYSYHAIQLEEEGFLKNDIAEEVVKLEKQIQQVIKLKEQWLHPSQLNPNQLAETGRPRSHDN

FPYLVKDEDLVGIEDHKRLLAGWLYSDEPDRAVITVSGIGGLGKTTLVTNVYEREKVNFAAHAWIVVSQTYNVEA

LLRKLLRKIGSTELSLDSLNNMDAHDLKEEIKKKIEDSKCLIVLDDVWDKKVYFQMQDAFQNLQATRVIITTREN

DVAALATSTRRLNLQPLNGADAFELFCRRAFYNKGHKCPKELEKVANSIVDRCHGLPLAIVTIGSLLSSRPAAEF

VWNKIYKQLRTELANNDHVRAILNLSYHDLSGDLRNCFLYCSLFPEDYTMTRESLLRLWVAEGFVLGKEKNTLED

VAEGNLMELIHRNMLEVVDNDEIGRVNSCKMHDIVRVLALSIAKEERFGSANDLGTMLLMDKEVRRLSTCGWSDD

TVSTVKFMRLRTLISLSTTSLPLEMLSSILCGSSYLTVLELQDSEITEVPTSIGNMFNLRYIGLRRTKVKSLPES

IGKLSNLHTLDIKQTKIEKLPRSIVKIKKLRHLIADRYVDERQSDFRYFVGMHAPKELSNLQELQTLETVESSKD

LAEQLKKLMQLRSSFPHLKTLVLKHMPNVNQLKIMDGALPSIEGLYVVSLSKLDIVPEGIESLRTLKKLWLLYLH

RDFKTQWHKNRMHQKMQHVPEIRV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	141	445	7.7e-77
NB-ARC [Pfam ls]	141	445	2.1e-77
LRR [Pfam ls]	583	605	2.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	560	582	0.54
LRR [sensitive, ls]	560	582	5.9
LRR [sensitive, ls]	583	605	0.21
LRR [sensitive, ls]	583	605	2.3
LRR [sensitive, ls]	606	628	1.2
LRR [sensitive, ls]	606	628	14

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	12	746	3e-94
Mla1 [Hordeum vulgare].	20	633	4e-58
Pib [Oryza sativa].	51	335	7e-13
I2 [L. esculentum]	69	667	1e-55
Pi-ta [Oryza sativa]	72	720	4e-39
M [L. usitatissimum]	147	496	2e-21
L6 [L. usitatissimum]	154	513	2e-22
N [N. glutinosa]	158	742	5e-17
Pib [Oryza sativa].	174	640	7e-53
RPS2 [A. thaliana]	176	757	8e-41
Xa1 [Oryza sativa]	183	689	3e-35

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4490.m00121

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)