Report for 4490.m00122

 > 4490.m00122, length: 944, copies: 1 

MAEAVLLALTKIGDALANEIAKELIAKLSEKVNNLKDLDEKIEQMRKQLTTMNNVILQIGTTYLTDEVVKGWIGE

VRKVAYRVEDVMDKYSYYSVQMAEEWFLKKYFIKASHYVIVFTEIANEVVKIEKEIKQVIELKDQWLHPSQLVSD

PLTEMERQRSRDSFPELVKDEDLVGIEDNRRLLTEWLYTDELDSKVITVSGMGGLGKTTLVTNVYEREKINFSAH

AWMVVSQTYTVDALLRKLLWKVGYTEPPLSSNIDKMDVYDLKEEIKRMLKVRKCLIVLDDVWDQEAYFQIRDAFQ

NDQGSRVIITTRKNHVAALASSTCHLDLQPLSDIHGFDLFCRRAFYNIKDHECPTELVKVAKSIVERCQGLPLAI

VSIGCLLSSRSRSHYVWNQAYNQLRSELSKNNHVRAILNMSYHDLSGDLRNCFLYCSLFPEDYPLSRESLVRLWI

AEGFVLRKENNTPEAVAEGNLMELIYRNMLQVTEYDDLGRVNTCGMHDIMRDLALSAAKEEKFGSANDFGTMVEI

DKDVRRLSTYRWKDSTAPILKLLRLRTIVSLEAFSSSIDMLSSVLSHSSYLTVLELQDSEITQVPPSIGNLFNLR

YIGLRRTKVKSLPDSIEKLLNLHTLDMKQTKIEKLPRGITKIKKLRHLFADRCVDEKQSEFRYFVGMQAPKDLSN

LKELQTLETVEASKDLAEQLKKLIQLKSVWIDNISSADCDNIFATLSNMPLLSSLLLSARNENEPLSFEALKPSS

TELHRLIVRGQWAKSTLDYPIFRSHSTHLKYLSLSWCHLGEDPLGMLASNLSDLTYLKLNNMQSAATLVLRAKAF

PKLKTLVLRQMPDVKQIKIMDGALPCIECLYIVLLPKLDKVPQGIESLNSLKKLSLLNLHKDFKIQWNVSPEDRE

ELLLLSISIRIPLTDWVLHIDRTAPALQPCSLVFQQVMLLNLLV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	156	460	9.4e-71
NB-ARC [Pfam ls]	156	460	2.6e-71
LRR [Pfam ls]	575	597	1.1
LRR [Pfam ls]	778	805	3.8

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	575	597	0.1
LRR [sensitive, ls]	575	597	1.1
LRR [sensitive, ls]	598	620	0.55
LRR [sensitive, ls]	598	620	6
LRR [sensitive, ls]	621	643	0.89
LRR [sensitive, ls]	621	643	9.7
LRR [sensitive, ls]	778	805	0.35
LRR [sensitive, ls]	778	805	3.8

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	15	707	7e-61
RPM1 [A. thaliana]	24	884	2e-98
I2 [L. esculentum]	36	682	2e-53
Pi-ta [Oryza sativa]	66	626	8e-38
Pib [Oryza sativa].	67	361	2e-13
M [L. usitatissimum]	160	751	2e-19
L6 [L. usitatissimum]	167	511	1e-16
Pib [Oryza sativa].	169	655	4e-54
N [N. glutinosa]	171	828	4e-15
RPP5 [A. thaliana]	171	881	2e-11
RPS2 [A. thaliana]	189	867	4e-35
Xa1 [Oryza sativa]	196	883	1e-37

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	21	56

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4490.m00122

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)