Report for 4490.m00125

 > 4490.m00125, length: 1471, copies: 1 

MAEAVLLALTKIGNVLADQVAKDLLAKLSEKVNNLRDLDEKIEQMRMQLATMNNVIWKISMTCLTDEVVKGWIGE

VRKVAYRVEDVMDKYSYYSVQMAEEWFLKKYFIKGSHYVLVFTQIADEVVKIEKEIKQVVELKDKWLPLCPFVSH

PLTEMERQRSQDIFPELVKDEDLVGIEDNRRLLTEWLYYDELDNKVITVSGMGGLGKTTLVTNVYEREKTNFSAH

AWMAVSQTYTVDALLKKLLRKVGYKGEIDKMDVYDLKEEITRVLKDRKCLIVLDDVWDQEAYFKICDAFQSNQQS

RVIITTRKNHVAALASSACRLDLQPLDGNQAFDLFCRRAFYSTKDHECPSELVEVAASIVDRCQGLPLAIVSIGS

LFLFSEDYPISRESLVRLWIAEGFVLSKENNTPEVVAEGNLMELIYRNMLQIKENDELGRVTTCTMHDIVRDLAL

SIAKEEKFGSANDFGTMVQINKDVRRLSSYEWNDSVAATAPKFKLPRLRTLVSLGAISFPTYMLDSILSESSYLT

VLELQDSEITQLPKSIGNMFNLRYIGLRRTKVKSLPDSIEKLSNLYTLDIKQTKIEKLPRGITKIKKLRHLLADR

YDDEKHSEFRYFKGVQAPKDLSNLEELQTLETVEASKDLAVQLKKLMQLRSVWIDNISSADCGNIFATLSTMPLL

SSLLLSARDENEPLCFEALQPMSKELHRSIIRGQWAKGTLDYPIFLSHTTHLKYLALSWCNLGEDPLGMLASHLS

NLTYLRLNNMHSSKTLVLDAEAFPHLKTLVLMHMPDVNQINITDGALPCIEGLYIVSLWKLDKVPQGIESLASLK

KLWLKDLHKDFKTQWKGDGMHQKMLHVAEIYFIVANFLRRVNSLTESSDDICHRLGSQVEKAPAFQELREVLMSN

YGNLSDHLVKTCLLYMSVFPKGFEIRRNSLARRWVAEGYAQSVGKFTDETVAHQNFKKLLDQNIIEPMGACDNAR

VKTCRTNAVMREFMLHRSFCDHFIGSLDTMSESDDPSTFRHLFIQNCTNINILRLAKKKLRARSLTIFGSGGGGA

VSCMRDAPALDLKECNDFDDNRVKGIMKDNLSRLKYLSLGSATTKLPKAIENLQCLHTLELRKTNVVALPIEVIK

LPHLVHLFGKVKLRKKRSIHAVQVIDDIISNKKSIGQKSKLQTLSGFIIDKDSIIPQLMVHMRGLRKVKIWCDYS

TGEGNTIHLKEAIENMVMYEMDTGVGVRSLSLYLGNALENLLGLLGETNGFLTTLKLHGRLSQFPKFVTSLTGIK

ELCLSSTNLTGSDLSGSGLGDLPCLLYLKLVEYNLVGFVIKKGDYPVLQRLCLVVESPNPILPKIEEEALPELVS

LHLLCVRLGDLAGINIRNHTNLQEVALDSAISMETIITWENEARKHPKRPKVLFFKRVGTPNTGCTILRSCGLFG

TASSRNSFWEKLQLGQTPPNRAFVLAPSLVATCKHVDRKAVVPQEL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	159	376	2.4e-45
NB-ARC [Pfam ls]	159	405	1.2e-32
LRR [Pfam ls]	523	545	3.6
LRR [Pfam ls]	546	568	2.9
NB-ARC [Pfam fs]	892	945	1.1e-06

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	523	545	0.33
LRR [sensitive, ls]	523	545	3.6
LRR [sensitive, ls]	546	568	0.27
LRR [sensitive, ls]	546	568	2.9
LRR [sensitive, ls]	569	591	1.2
LRR [sensitive, ls]	569	591	13
LRR [sensitive, ls]	726	753	0.55
LRR [sensitive, ls]	726	753	6
LRR [sensitive, ls]	1105	1128	2.1
LRR [sensitive, ls]	1105	1128	24
LRR [sensitive, ls]	1273	1298	0.7
LRR [sensitive, ls]	1273	1298	7.6

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	4	596	8e-42
I2 [L. esculentum]	14	601	2e-41
RPM1 [A. thaliana]	24	861	1e-76
Pi-ta [Oryza sativa]	66	652	2e-18
Pib [Oryza sativa].	67	398	3e-13
L6 [L. usitatissimum]	167	456	7e-15
M [L. usitatissimum]	167	833	4e-14
Pib [Oryza sativa].	169	607	5e-35
RPS2 [A. thaliana]	190	832	3e-21
Xa1 [Oryza sativa]	196	831	2e-25
Pib [Oryza sativa].	858	1165	3e-18
Mla1 [Hordeum vulgare].	874	1132	7e-19
Pi-ta [Oryza sativa]	882	1132	7e-18
RPM1 [A. thaliana]	893	1377	5e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	23	56

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4490.m00125

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)