Report for 4490.m00126

 > 4490.m00126, length: 912, copies: 1 

MEAVILAVSKIGSVLVEEATKAAIAKLSEKVANLKELPTKVDEIKKELETMNNVIKKMSTTHPIDEVVKGWIVEV

RGLAHHVQDVMDKYSYHALMLEEESSMKKVFTKKKYVTVFSDIAEEIIQIEKKIENAGKRKERWLQQPDLIPNPL

TYIERKQFQDCLLAQDYLVGIEGNRKLLTEWLYSSEQGNTVITVSGMGGLGKTALVNNVYEYEREKNNFDAFSWI

VVSQTYNGVDLLRKLLRKIGVVETTPTIGYPEQTNLSDLDPRDLKNIIKERLKDRKFLVVLDDVWNREAYTLIED

AFLSCQTSRIIITTRQDDVATLAYPTHRLKLKPLEHNDAFDLFCKKTFYNSMHSKCPQDLEKLAHNIVDRCEGLP

LAIVSIGGLFSSVKLESYIWNEMYKQLGDELVNNDHIRAILNLSYRDLPGHLRNCFLYCSLFPEDHLFSRDTLIW

LWVAEGFAVRKQHSTPEEVADRYLRELIQRNMLDVVENDELGRASSCKMHDLVRDLALSIAKEEKFGFSNDYGTM

IEMERDVRRLSSCGWENNDVLKLKFPRLRTLVSLRAMSPSTYMLSSILSESNYLTVLELQDSEITEVPESIGNLF

NLRYIGLRSTKVKTLPQSVEKLSNLHTLDIKQTKIEKLPKGIAKVKKLRHLIADRYADETQSTFQYFVGMQAPKN

LSNMEELQTLETMQASKDLAEQLSKLLKLRRVWIDNISYTDCAKLFATLSNMQLLSSLLISARNENEALCFEELR

PKSKELHKLIIRGQWAKQTLDYPIFRYHGTQLNYLALSWCYLGEDMLGILSSRLENLTCLRLNNIHGTKTLVLDA

KAFPRLKMLVLKHMPDVNQIQIMNGALPVIEGLYIVFLSGVESVPPGIETLRTLKKLWLLNLHKNFKADWIEREM

QQKMQHVPELLM

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	152	463	1.6e-70
NB-ARC [Pfam ls]	152	463	4.5e-71
LRR [Pfam ls]	578	600	1.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	578	600	0.13
LRR [sensitive, ls]	578	600	1.4
LRR [sensitive, ls]	601	623	0.53
LRR [sensitive, ls]	601	623	5.8
LRR [sensitive, ls]	624	646	0.52
LRR [sensitive, ls]	624	646	5.7
LRR [sensitive, ls]	781	808	6.6
LRR [sensitive, ls]	781	808	72

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	11	910	1e-103
Mla1 [Hordeum vulgare].	27	651	7e-61
I2 [L. esculentum]	43	699	1e-59
Pi-ta [Oryza sativa]	60	629	3e-38
Pib [Oryza sativa].	66	322	3e-11
N [N. glutinosa]	98	847	4e-15
M [L. usitatissimum]	148	514	8e-16
L6 [L. usitatissimum]	159	514	5e-16
Pib [Oryza sativa].	165	658	1e-57
RPS2 [A. thaliana]	171	720	9e-37
Xa1 [Oryza sativa]	188	868	3e-38

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	39	60

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4490.m00126

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)