Report for 4505.m00225

 > 4505.m00225, length: 938, copies: 2 

MSQLQYFLIDAEQRRSEESAVNIWLGELKDATYEAEDILDLASFEGNKLLSQNPLPSSSSRNSTGCTGFSFFCCL

PNIHRRHEIAVRIRNFNFELEKIFKMGELYLKLQNMQPTVQVPAAKPIKTCQLLEPNLVGKEILHGCTRLVKLVL

AHKDKRAYRFGIVGTGGIGKTTMAQKIYNDHRIKGIFSKRAWICVSQDYSDVNLLREVLRNFAVYQEQGETVTEL

KSKLAATVKGESFFLVLDDVWKHEVWTYLLGTPLLAASTGIVVITTRHDTVAREIGVEHMHQVEFMSAAVGWELL

WKSMNIEREKEVQHLREIGIEIVRKCGGLPLAIKVIARVLSTKEKSENDWRKVINKSAWSRGMLPTDLRGALYLS

YEELPRHLKRCFLYCALHPEDWFILRDDLIGYWIAEGFVEEQEEQLLEETAEEYYYELIYRNLLQPEHTYFNNIM

CRVHDLLRQLAWHLSGDEIFYGEPESLGAKTLSKLRRASIYTKKDSVVLPDMDNEHTRVRTLNIQCSLPMTITQL

CNLRRLGLCHTPINEVPKGINRLKFLNDLGGFPISSGSNNNTEIQDGWNLDELGSLSQMRRLDIIKLERATPLYS

TTSLLTYKKHLKVLYLCCSGWTSEAYSDEDVSNNERIFEQLTPPNNLEDLSIYHFVFPKTPRTLRCKSCMHLPPI

GQLPCLKYMKILGTNITKIGPEFVGFGVHKLESVEVAAFPKLECLVFSDMPNWEEWTFNETASVSVEASTPLTLK

FLPCLEKLYIYGCPKLRALPLEIGQGTTRLRELHIRGANCLRVVDDIPFLSDCLSIRQCEGLERVSNLPQLRKLY

LGVCPNLRNVEDLNSLELLLQTTDMQEMSSQWVPQLRDQHRHLHHEDLDVYTWRWDREKPIFMTKLSQEKEYEVK

RTRQTVYSASEGYVQDLKEDVCGDKGLDMYRTSRREVY

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	116	419	4.8e-53
NB-ARC [Pfam fs]	161	419	3.3e-59
LRR [Pfam ls]	527	549	6
LRR [Pfam ls]	754	778	5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	527	549	0.22
LRR [sensitive, ls]	527	549	6
LRR [sensitive, ls]	680	702	3.6
LRR [sensitive, ls]	680	702	97
LRR [sensitive, ls]	754	778	0.19
LRR [sensitive, ls]	754	778	5
LRR [sensitive, ls]	779	804	2.4
LRR [sensitive, ls]	779	804	65
LRR [sensitive, ls]	820	842	0.79
LRR [sensitive, ls]	820	842	21

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	4	489	2e-51
Mla1 [Hordeum vulgare].	14	555	1e-40
RPM1 [A. thaliana]	81	594	5e-41
Xa1 [Oryza sativa]	83	468	5e-35
Pib [Oryza sativa].	130	589	4e-30
Pi-ta [Oryza sativa]	133	457	2e-31
RPS2 [A. thaliana]	141	840	3e-31
I2 [L. esculentum]	518	833	1e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4505.m00225

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)