Report for 4554.m00141

 > 4554.m00141, length: 908, copies: 1 

MADAISCLQPLCDCLDGTGLLDAAGREVASFLRLKSNWGDLDKARESLGAVERMVRGRVTAELNKLNVCDPQVEL

WLRRVDELKLGAIDEDYSSLMNYSSICQCTRHAARRSWIGKRIVEALDEVNKLIEEGRRFKKFGFKPSPEIVERL

PQTKTFGLETMLVQLHDLLEKADSNIIGIWGQGGIGKTTLLHAFNNDLEKKVHNYQVVIFIEVSNSETLDTLEMQ

KTISERLNLPWNEAEITVKRARFLVKALSRKRFVLLLDDVRKKFRLEDVGIPTPDTNSQSKLILTSRFQELSTEA

CAAVESPSPSNVVRDHAIAIAQSCGGLPLALNVIGTAVAGYEEPRDWNSAADAIKENMKFEGVDEMFATLKYSFD

RLTPTQQQCFLYCTLFPEYGSISKEHLVDYWLAEGLLLDDREKGNQIIRSLISACLLQTTSSMSSKVKMHHIIRH

LGLWLVNREDRSFVVKAGMALDNAPPAIEWKEATRISIMSNNITELSFSPKCENLTTLLIQNNPKLNKLGWGFFK

YMRSLKVLDLSHTAITSIPECDKLVALQHLDLSYTHIMRLPERLWLLKELRHLDLSVTVALEDTLNNCSKLHKLR

VLNLFRSHYGIRDVDDLNLDSLRDLLFLGITIYSQDVLKKLNETHPLAKSTHRLNLKYCGDMQSIKISDFNHMKH

LEELHVESCYDLNTLVADTELTTSCLQALTLSVLPSLENVLVAPMPHNFRYVRKLSISQCPKLLNITWVRRLELL

ERLVISNCDEMLTIVEEANSTEEQQYGTQTIKMQGYYSEEQDDHAMAESSRNEWNDDYQSVNGESTNGATRQPDF

PKLRSIVLTDVKKLRSICTPRDFPCLETLRVEDCPNLRRIPLCSTHNCGKLKQICGSSDWWKKLLWEDKEAVAHM

ESKYFIPI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	139	292	1.6e-30
NB-ARC [Pfam ls]	139	417	2.6e-47
NB-ARC [Pfam fs]	320	417	2.1e-21
LRR [Pfam ls]	504	528	2.8
LRR [Pfam ls]	529	550	0.012
LRR [Pfam ls]	551	573	1.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	504	528	0.14
LRR [sensitive, ls]	504	528	2.8
LRR [sensitive, ls]	529	550	0.00059
LRR [sensitive, ls]	529	550	0.012
LRR [sensitive, ls]	551	573	0.058
LRR [sensitive, ls]	551	573	1.2
LRR [sensitive, ls]	574	597	1.8
LRR [sensitive, ls]	574	597	35
LRR [sensitive, ls]	598	623	4.5
LRR [sensitive, ls]	598	623	90
LRR [sensitive, ls]	650	674	2.5
LRR [sensitive, ls]	650	674	50
LRR [sensitive, ls]	675	697	4.9
LRR [sensitive, ls]	675	697	98
LRR [sensitive, ls]	850	874	0.69
LRR [sensitive, ls]	850	874	14

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	5	889	1e-101
Mla1 [Hordeum vulgare].	34	605	3e-18
Xa1 [Oryza sativa]	99	681	8e-17
I2 [L. esculentum]	152	860	4e-22
Pib [Oryza sativa].	152	606	2e-15
N [N. glutinosa]	157	692	5e-14
L6 [L. usitatissimum]	169	790	4e-15
M [L. usitatissimum]	169	716	3e-14
RPP5 [A. thaliana]	169	745	1e-12
RPM1 [A. thaliana]	176	610	1e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4554.m00141

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)