Report for 4648.m00170

 > 4648.m00170, length: 651, copies: 1 

MQLFSADLKSKVLLFSIKKANTVYSRVLLFLKIKQIDNNFQGSMKLIAFGLLLLGYIQYFATPDSEVIALYEIRT

MLNDSRGVLNGWNNNQVSPCYFPSISCNQDQKVISITLSSSGLSGFLSPSIGKLLYLQQLLLNDNNITGGIPQEL

GNLSSLTTLKLGGNSLNGSIPDSLGRLSKLQNLDMSKNLLIGNIPTSLSNLSSLNDINLADNNLSGEIPKRLLQV

SHYSYIGNHLNCGQHLISCEGNNINTGGSNNSKLKVVASIGGAVTLLVIIVLFLLWWQRMRHRPEIYVDVPGQHD

HNLEFGQIKRFSLRELQIATNNFSEQNVLGKGGFGKVYKGVLSGPHGRKVAVKRLFEVEKPEGEIAFLREVELIS

IAVHKNILRLIGFCTTTKERLLVYPYMENLSVASRLRDIKLNEPALDWPTRVRIALGAARGLEYLHEHCNPKIIH

RDVKAANVLLDGNFEAVVGDFGLAKMIDRERNTVTTGVRGTMGHIAPEYLKTGRPSVKTDIFGYGVMLLEIVTGE

RAVFPEFSEGDSEIMLNDQVKRLVQGGRLTDIVDHNLDTAYDLQQLEKMIQIALLCTHVEPHLRPAMSEVVQMLE

GNVVPAEQWEEWQVAELARRHQHEMNQQRRLFSFSEESLNIQEAIQLSSGR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	131	154	0.068
LRR [Pfam ls]	155	178	0.18
LRR [Pfam ls]	179	202	0.73
LRR [Pfam ls]	203	227	0.44
Ser/Thr pkinase [Pfam fs]	323	524	4.3e-46
Ser/Thr pkinase [Pfam ls]	323	601	2.6e-44

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	107	130	7.2
LRR [sensitive, ls]	107	130	79
LRR [sensitive, ls]	131	154	0.0062
LRR [sensitive, ls]	131	154	0.068
LRR [sensitive, ls]	155	178	0.016
LRR [sensitive, ls]	155	178	0.18
LRR [sensitive, ls]	179	202	0.067
LRR [sensitive, ls]	179	202	0.73
LRR [sensitive, ls]	203	227	0.041
LRR [sensitive, ls]	203	227	0.44
LRR [sensitive, ls]	312	338	7.7
LRR [sensitive, ls]	312	338	85

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	1	599	8e-55
FLS2 [A.thaliana]	20	222	1e-18
Cf-9 [L. pimpinellifolium]	25	235	8e-14
FLS2 [A.thaliana]	44	235	2e-22
CLV2 [A. thaliana]	69	236	4e-14
Xa21 [O. sativa]	84	236	4e-25
Cf-9 [L. pimpinellifolium]	97	219	1e-10
Xa21 [O. sativa]	98	231	1e-17
CLV2 [A. thaliana]	106	222	4e-13
FLS2 [A.thaliana]	106	226	1e-13
CLV2 [A. thaliana]	108	222	3e-12
CLV2 [A. thaliana]	110	231	3e-14
FLS2 [A.thaliana]	110	236	9e-16
FLS2 [A.thaliana]	110	231	9e-16
Cf-9 [L. pimpinellifolium]	111	270	2e-11
CLV2 [A. thaliana]	111	253	1e-11
FLS2 [A.thaliana]	111	266	5e-17
FLS2 [A.thaliana]	111	227	5e-11
FLS2 [A.thaliana]	111	260	9e-11
Xa21 [O. sativa]	111	407	2e-26
Xa21 [O. sativa]	111	219	2e-15
Xa21 [O. sativa]	111	236	4e-14
FLS2 [A.thaliana]	113	220	1e-17
FLS2 [A.thaliana]	113	223	5e-13
FLS2 [A.thaliana]	118	278	1e-15
Cf-9 [L. pimpinellifolium]	137	233	2e-11
Rpg1 [Hordeum vulgare]	309	599	6e-35
Pto [L. esculentum]	310	600	2e-46
Rpg1 [Hordeum vulgare]	311	600	1e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	261	283	in -> out

Report for 4648.m00170

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)