Report for 4652.m00098

 > 4652.m00098, length: 946, copies: 1 

MDLRLLLAPGGRRAAMALILAVLAACLSSAANVGAVTSAEVSYIAHRQLLAMKEAGVSEEGDLPSDDFDFDDRVG

VAVGDFPNPRLRKAYIALQAWRRAFYSDPKGYTNNWTGNDVCSYNGVICYAAIDDPKIMVVAGIDLNGADIAGYL

PPELGLLTDLAFFHINTNRFCGIIPKSMSRLSLLHEFDVSHNRFVGVFPHVCLEMAVLKYLDIRFNDFEGELPPA

LFDKELDAIFVNSNRFVGYIPGNLGNSTASVIVFANNAFVGCIPKSIGCMAKTLDEISFMNNKLDGCVPMEMGYL

QNTYVIDISGNVLVGTLPTSLSNCSKLEQLDVSRNVFTGIVHESICELPVLVNFSFAYNFFNSESAPCMPSESSK

VNLDDKDNCLGALRPAQKTTLQCAPVLARPVDCSKHVCPGHPTPGKPSEPPEKPPLIPVPVGPPEKSPAYEEPPA

APSTPTSHGPPPPEEESPEEPPEEPTPSPTPSSPESPAKMAPPPAPAIKGVTSPPAEYGAPPPPSSGWLPKSPER

KKAPPPQAEPPTEYSPPATPESSPPPEGKSPPTPTASHSPPPVPEGHTPSPPKSGPPAGESPPTPESKASPPPTP

EEYTPSPPKSTPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPLTPESKASCPPPPTPEGHTPSPPK

STPPTEKSPHTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTPESEASSPPPPAPEGHTPSPPKSSPPEEKSP

PIPPTSHTSPPTPEEYTPSPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPP

SGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPPEAHVSSPPPPEKSPPPPETKSPPTLTPEISPPPEGKSPPS

HTPESSSPPSKESEPPPTPTPKSSPPSHEEREVPTITYSGELIPTI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	326	349	0.06

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	159	182	7.2
LRR [sensitive, ls]	159	182	79
LRR [sensitive, ls]	183	206	3.7
LRR [sensitive, ls]	183	206	41
LRR [sensitive, ls]	207	231	0.6
LRR [sensitive, ls]	207	231	6.5
LRR [sensitive, ls]	302	325	0.56
LRR [sensitive, ls]	302	325	6.1
LRR [sensitive, ls]	326	349	0.0055
LRR [sensitive, ls]	326	349	0.06

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	92	359	6e-18
FLS2 [A.thaliana]	107	392	6e-20
CLV2 [A. thaliana]	109	392	3e-14
Xa21 [O. sativa]	117	364	2e-22
Xa21 [O. sativa]	117	367	2e-16
FLS2 [A.thaliana]	130	344	6e-18
Xa21 [O. sativa]	132	327	2e-15
FLS2 [A.thaliana]	133	359	2e-17
FLS2 [A.thaliana]	134	378	5e-13
Cf-9 [L. pimpinellifolium]	139	336	1e-13
CLV2 [A. thaliana]	139	383	1e-12
FLS2 [A.thaliana]	139	390	4e-18
FLS2 [A.thaliana]	139	359	1e-17
FLS2 [A.thaliana]	139	396	1e-15
FLS2 [A.thaliana]	139	385	8e-14
CLV2 [A. thaliana]	141	362	7e-15
FLS2 [A.thaliana]	145	359	3e-18
FLS2 [A.thaliana]	146	385	1e-26
Xa21 [O. sativa]	146	361	1e-16
Cf-9 [L. pimpinellifolium]	154	362	2e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4652.m00098

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)