Report for 4652.m00104

 > 4652.m00104, length: 976, copies: 1 

MELAMGAIGSVLPRLAELLKEEYKLQKGVKNDVESLSRELAAMHIALERVAKVPREMVELDVKLWASNVRELSYA

IEDAIDAFVVRVAEGSNLVDPINQGFFKRILRKTSDLIRKGKARREIAEGICDIKELADEVAELRARYKFDAAAA

ATTPATATVDPRILALYKDITELVGIEEARDELIGMLSRPADDDQLNIVSVVGFGGLGKTTLAKVVYDKLRGQFD

CAAFVSVGQNPDLKKVLTDMIYDLDRQRYISIHNSRMDERLLINELRDFVQNKRYIIIIDDIWDEKLWEYIKCAF

YRNKLCSRIITTTRKVTVSKACCSHDDAIYRMKPLSDDASKRLFYKRIFKHDNGCPPELEQVSIGILKKCAGMPL

AIITIASLLANKQVQTRDQWHDVFNSIGRGLTEEPKVEDMTKILSFSYYDLPCHLKTCLLYLSIFPEDFIISRDH

LVRMWIAEGVVQKTTNQKDDVLVELGENYFYELINRSMIQPWDENDFMYYKDGYDNAIISCRVHDMVLDLILSLS

NEENFVTILDQERGASSLSKAHRISLRDCNVVHTIPEATVPKVRFLSLLRADVHMTPAITIFPILRVLDLYNCHF

EESYHLKHLGNLFHLRYLRLHCGCITKLPNEIGNLQFLQTLDVHRSRSIKELPPAIYQLRRLMFLYFPENISLSD

RIGELTSLLELSPVDVFRRTSSIDVNGDSFSLLKALGNLTELRDLTIQVWSSEVSSIGRILGEVLCNLHKLRRLI

LRGVHGIVHLDSLPEFLDLPQHIHVLGIKPMYFFTVLPVWFNFPIDLPYLSFLDLSICDMRQEHVEKLGRLPALQ

VLWIQINRESEWLVIGAGAFPSLTDCTFIQYCGLVFQPGAMPKVRKLEFNINVVDSEDINFDVGLGNLASIEEVT

IDLLCEDAVEWEVEEVENVLRHVADIHPKHPTLEMRRSDEDKMVLDDEEEQQSEDPMEDSDMEENRAPDSMASES

S

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	158	466	4.2e-67
NB-ARC [Pfam ls]	158	466	1.2e-67
LRR [Pfam ls]	614	636	0.24

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	545	569	7.6
LRR [sensitive, ls]	545	569	83
LRR [sensitive, ls]	589	613	1.5
LRR [sensitive, ls]	589	613	17
LRR [sensitive, ls]	614	636	0.022
LRR [sensitive, ls]	614	636	0.24
LRR [sensitive, ls]	637	660	0.51
LRR [sensitive, ls]	637	660	5.6
LRR [sensitive, ls]	745	770	3
LRR [sensitive, ls]	745	770	32
LRR [sensitive, ls]	799	822	7.6
LRR [sensitive, ls]	799	822	83

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	950	1e-180
RPM1 [A. thaliana]	3	872	2e-57
Pib [Oryza sativa].	62	419	4e-14
Pi-ta [Oryza sativa]	65	717	3e-76
I2 [L. esculentum]	68	665	5e-49
L6 [L. usitatissimum]	93	543	1e-15
Xa1 [Oryza sativa]	129	717	8e-30
N [N. glutinosa]	170	827	8e-14
RPS2 [A. thaliana]	170	852	4e-30
Pib [Oryza sativa].	171	666	1e-57
M [L. usitatissimum]	172	440	5e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4652.m00104

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)