Report for 4660.m00138

 > 4660.m00138, length: 511, copies: 2 

MTTTTTTTNHSAKSILLLALLLVPHLAAASSGDALISQRRRLLDYHGGGGGHGGGDVYVDPSYTFPNARLRDAYV

AMQAWKRAVLSDPHNVTGTWIGPDVCAYEGVFCAAARDDPHLVVVASVDLNHADMAGHLPDELGLLADLAVLHAN

SNRFCGAVPSTLERLHLLHELDLSNNRLVGAFPDVVLRLPSLRYLDLRFNDFEGPVPAELFDRPLDAIFLNSNRL

RFRIPDNVGNSPASVLVLANNDFGGCLPASVANMSGTLDEIILMNTGLKSCIPPELGMLTGLAVLDVSHNSLMGA

IPGELARLENIEQLDLGHNRLTGDVPEGICHLPHLQNFTYSYNFITGEPPVQEVRPPVASATATIAAAAVSSTAV

TLSSTTFTSSSISTTTISIASSTFSPAAVSSTTIAIAASTISTASISSSAIASVLQLAAAAVLRGFTGGQVPLAA

ATSGVPRGAATAVLRGVAGGQDQLRVVSALISIVDGVYNCTTTMQRVSPDSNCVDLFSAET

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	167	190	2.1
LRR [Pfam ls]	191	215	4.1
LRR [Pfam ls]	286	309	6.3
LRR [Pfam ls]	310	333	0.0094

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	143	166	4
LRR [sensitive, ls]	143	166	80
LRR [sensitive, ls]	167	190	0.11
LRR [sensitive, ls]	167	190	2.1
LRR [sensitive, ls]	191	215	0.21
LRR [sensitive, ls]	191	215	4.1
LRR [sensitive, ls]	262	285	5.3
LRR [sensitive, ls]	262	285	100
LRR [sensitive, ls]	286	309	0.32
LRR [sensitive, ls]	286	309	6.3
LRR [sensitive, ls]	310	333	0.00048
LRR [sensitive, ls]	310	333	0.0094

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	49	447	2e-19
CLV2 [A. thaliana]	74	351	5e-21
FLS2 [A.thaliana]	76	350	3e-23
CLV2 [A. thaliana]	82	352	3e-25
FLS2 [A.thaliana]	112	347	1e-22
FLS2 [A.thaliana]	112	350	7e-19
Xa21 [O. sativa]	112	326	6e-18
Cf-9 [L. pimpinellifolium]	115	347	3e-15
Cf-9 [L. pimpinellifolium]	116	347	2e-16
Xa21 [O. sativa]	116	350	4e-21
FLS2 [A.thaliana]	117	350	3e-21
Xa21 [O. sativa]	120	354	7e-22
Cf-9 [L. pimpinellifolium]	123	328	1e-11
CLV2 [A. thaliana]	123	350	3e-14
FLS2 [A.thaliana]	123	350	1e-21
FLS2 [A.thaliana]	123	350	1e-20
Xa21 [O. sativa]	123	275	1e-13
CLV2 [A. thaliana]	125	348	5e-17
FLS2 [A.thaliana]	129	350	5e-20
CLV2 [A. thaliana]	130	350	2e-19
Cf-9 [L. pimpinellifolium]	138	347	5e-15
Cf-9 [L. pimpinellifolium]	142	361	8e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	13	35	in -> out

Report for 4660.m00138

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)