Report for 4669.m00224

 > 4669.m00224, length: 961, copies: 1 

MVGATASALIGVMNPLLTKLSGLLEREYGKLKGVGREVALLRDELSSMNTALEAVSDSEEEPSSQVKEWMRQLRE

LSYDVEDCIDVFVHRLGHHDPGDGLFRRTKRRLKALRSRHCIAGQIAELKDRAVLVNDRRKRYELDAAASSSAAI

AIDSRLPALFEEMDRLVGIEGPRDELVEFLTGGINLAPQRRVVSIVGFGGLGKTTLANQVYQHIKSQFDRTAFVS

VSRNPNVNKILANILIGILETRKLSSVHQKQHSDTIEDLKHKTFEDCKLISLIRENLQNSRYFIVIDDIWDKAAW

RDHLRFAFPENNSASRIITTTRINDVAIACHFSHEDFVYAMKPLSSENSEALFFRRIFSSKEKCPPELEEVADDI

LKKCDGLPLAIVSIASLLSCKPVTKQEWVWVLNSFGSTVMKDQGSHELAVVKRILFLSYSDLPHHLKSCLLYLSI

FPEDHTITRDFLISRWIAEGFITEQRGESLEEVGEKYFNELINRNMVQSFEIDPFSRREAYRMHDIMLDLMISLS

TEENFATILDGQHCAPSSNKIHRFSLQCKSVERITWLRTTSFSHARSLSVFGDFNKIPPLVDLEVLRVLDLLNCS

SLKDDHIENIGSLFQLRYVRLGNISRIPRQIGKLKLLQTLDLSGTAVKKLPQSIVQLLQLVRLFLPWRVELPNGI

GNMEALQVLSVFDGTENTSAIIQELGNLTKLKDLDVYWNCNDTESGHEVYINHLVRSLCKLGGFNLQSLCIRNIY

PCSLDILAESWSPPPRHLQTFQTDMGCYFSSLPTWMSSLSELTCLRIHMKKVGEEDLQVLKCLPALLRLDLYPGY

PKHTLKVSCSGFSCLKEFTYGPSYVDLALILRHQSTIKNGLGMGVMFEAGAMPKLQQLEFGFNAHDMVSAYGAGL

DFGIQHFASLRHVRVFIDCRDASDCEMEAALAATANSVSLRGSYHVEIRRILKNVENDEQS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	151	477	9.4e-66
NB-ARC [Pfam ls]	151	477	3.1e-66

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	11	959	1e-131
Pi-ta [Oryza sativa]	12	706	5e-81
RPM1 [A. thaliana]	19	841	7e-69
I2 [L. esculentum]	38	711	5e-45
Pib [Oryza sativa].	59	354	2e-11
RPS2 [A. thaliana]	102	711	4e-22
M [L. usitatissimum]	111	792	5e-16
N [N. glutinosa]	124	403	5e-11
L6 [L. usitatissimum]	159	798	3e-12
Pib [Oryza sativa].	162	884	2e-67
Xa1 [Oryza sativa]	192	821	1e-34

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4669.m00224

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)