Report for 4696.m00135

 > 4696.m00135, length: 842, copies: 1 

MAEAVILLAVKKICVALGNEAINQATSKFKKFVSQITELQGSMGRIKRELRLIHQFLSRMDVRNRNNETSQHLAS

ISRSLGEEDLVGVNQNRETLEEWLADDLLERSVITLHGMGGLGKTALAANAYMREKEKFQCHAWVSISQSYCIKD

VLKCLITELSRNVKKTNWGNITDMDTGGFREELKRFLKLQKCLIVLDDVWAPEVINDLFGAHVPNLKGSRILVTT

RIDDVAQLAFPDRRITLEPLCEKESWELFCRTAFPRETNHECNAELLHLIDQIVSKCKGVPLAIVSIGRLVFVRD

KTKEELRRIHDQLDWELINNPSLEHVRNILYLSYIYLPTQLKSCFLYCSLFPEDHLLKRKALIRWWIAEGFISKR

GRSTMEEVAEGYLQELVNRNMLQLIDRNSFGRIKSFRMHDIMHELAVDLCRRECFGVAYDEDNRRWEHEDRDERR

LVVHKLNKDIDQEISCAHSLRSVITLDNSMISSSSILCLVVDNCRYMSILELSGLPISTVPDAIGDLFNLRHLGL

RGSNVKFLPKSIEKLTNLLTLDLFRSSILELPRGIVKLTKLRHLFAEKQTDRHRRLFRWCTGVSIPRGLENLTSL

QSLQALEAQDESVRCLGELRQMRGLRLWKVKASLCERLYESLLQMKCLSYLSITASDEDDVLQLDGLNPLPPSLH

KLRLSGRLAHTMLGAESPLFQEDAGGRNLYSLRLFWSQLKEDPLPSLSRLLNLTELHFTRAYNGEKLVFLTRWFP

KLKVLRLRDLPNLKRMDIQQGAMVSLERLRLINLSSMEEVPLGIEFLMPLKYLSFEEITVDFLLSLRQSRIGGMR

WWHTLREENDMEAGVRT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	68	377	4.3e-65
NB-ARC [Pfam ls]	68	377	1.5e-65

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	496	518	2.8
LRR [sensitive, ls]	496	518	54
LRR [sensitive, ls]	519	541	0.075
LRR [sensitive, ls]	519	541	1.5
LRR [sensitive, ls]	542	564	0.87
LRR [sensitive, ls]	542	564	17
LRR [sensitive, ls]	703	729	7.5
LRR [sensitive, ls]	703	729	150

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	5	647	3e-48
L6 [L. usitatissimum]	72	428	5e-16
M [L. usitatissimum]	72	351	2e-14
RPM1 [A. thaliana]	72	817	1e-102
Pib [Oryza sativa].	73	797	2e-52
Xa1 [Oryza sativa]	74	603	2e-35
RPS2 [A. thaliana]	78	791	1e-34
I2 [L. esculentum]	82	573	2e-43
Pi-ta [Oryza sativa]	85	603	2e-36

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4696.m00135

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)