Report for 4731.m00189

 > 4731.m00189, length: 497, copies: 2 

MGTRRRRNPVIFLFLWFVMAFELCASLNHEGVALMRFKEMIDADPFDALLDWDEGNASPCSWFGVECSDDGRVVA

LNLPNLGLKGMLPQEIGTLAHMRSIILHNNSFYGIIPTEMKYLHELKVLDLGYNTFSGPFPSELRNILSLKFLFL

EGNKLSGSLPIEYELASMDQTSLNKISTERKTSTVVPFSPTASGQLHTATLGGITKFKRSELETACEGFSNIIDT

LPRFTLYKGTLPCGAEIAAVSTLVTYASGWTTVAEAQFKDKVEVLSKVSHKNLMNLVGYCEDEEPFTRMMVFEYV

SNGTLFEHLHVKEADQLDWQSCLRIAMGVMYCLNYMQQLNPPVLLRDLSTSCIYLTEDNAAKVSDISFWGDKKED

EKSEASDEHITVYKFALLLLETISGRRPYSDDYGLLILWAHRYLIGDKPLMDMVDPTLKSVPEEQVRELTKLVKL

CLSEDPMERPTVAEVTAWMQEITGISEEEAIPKNSPLWWAELEIITS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam ls]	229	469	8.1e-09
Ser/Thr pkinase [Pfam fs]	267	326	3.1e-07
Ser/Thr pkinase [Pfam fs]	442	469	0.026

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	96	119	0.96
LRR [sensitive, ls]	96	119	26
LRR [sensitive, ls]	120	143	0.47
LRR [sensitive, ls]	120	143	13
LRR [sensitive, ls]	144	167	0.41
LRR [sensitive, ls]	144	167	11

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	9	163	6e-13
FLS2 [A.thaliana]	12	162	2e-16
FLS2 [A.thaliana]	73	474	1e-17
Pto [L. esculentum]	206	481	1e-12
Rpg1 [Hordeum vulgare]	221	487	6e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	12	34	in -> out

Report for 4731.m00189

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)